1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
GGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAATGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttcactttgttttagtatcattatccataatgcaattaagctatcacttctttacag
species | Vitis vinifera |
transcript | Vv17s0000g07230.t01 |
intron # | 33 |
splice site | 5' |
intron type | U2 |
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|27581527|gb|CB004222.1|CB004222
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|87586738|gb|DY474892.1|DY474892
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|27579766|gb|CB002461.1|CB002461
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|27581266|gb|CB003961.1|CB003961
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|110360462|gb|EC923582.1|EC923582
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|30323293|gb|CD006555.1|CD006555
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|27755234|gb|CB035989.1|CB035989
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: ATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|110689535|gb|EE065843.1|EE065843
genomic: ATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAAEST: gi|30322055|gb|CD005317.1|CD005317
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
EST: TGAATTCCAAACGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAG GTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
genomic: TGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttc ... ttctttacagGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAATGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGgtaaaagttcactttgttttagtatcattatccataatgcaattaagctatcacttctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT