Sequence
atgc intronic sequence ATGC exonic sequenceGAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 3
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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GGCCGCGGGTGGCGGAGTGCCTGGAGGACATCGACGGCGAGGACCCCGTCCGCAAGGCCTTCAGCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGgtgggtgctgggtaggtgatgcagtgcgtaatcgtgtacagtttcgagtgttt-----tttgcccccttggttctcgtggagtcagtcgacgactcg-atttggta------------------------------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 3
GAGGCA-GAGTTGGAGAGTGTCTGGAAGAGAT---TGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactggg-taggt-gtttttatttgatttcatctctctctccctctctttccctc---tctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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----CACGGGTGGCGGAGTGCCTGGCGGACATGAGCGGCGGCGAGGACCCGGTGCGGAAGGCCTTCATCAAGATGTCCATCCAACTCTACAACTACGGAGAAGGgtgggtactatactgggtaggtgctgtgcaggtgcaggtg-caggccgtcgagttcggtcggagtcgtgtcgtgtgcaatttctttccgactttccaatct----------------------------------------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 2
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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GAGGAAGAGGTTCAGGATGTCTGGAAGATATTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGgtgggtactgggtaggtgttttgttatgttgtggttttgttctctctctctctctttctttctct-atcactttcttttctctctctctctctttgtgaat-----------------------------------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 3
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcaga-aaagtgaaaaaataaaaataaaaaacaaaaattcctctaca-tgggctttgataggatgaatt--gcttttatgagcag
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AAGGAAGGGGTTCAGGATGTCTGGAAGATATTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGgtgggtactgggtaggtgttttgttatgttgtggttttgttctctctttctttctcagtcactttctttctctctctctctgtgaatcttgttcaatatccaattacatgtggagggactagggagttaagttacttatgcacatctgaactgtgctctgattgggtggaattggattttgggaacag
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 3
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctct--------ctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctaca-tgggctttgatagg-atgaattgcttttatgagcag
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GAGGAAGAGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGgtgggtactgggtaggtgtttattcatgttgttattatttttttcccaagtttccttgtacctattttctgtttcattttaagtgttctttatttcagtaccatgttggagggagttacac---atctttcaaacacaatgacaatttctctctgcactttactctgataggtgttgtttggttttgggaacag
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 3
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgttt--ttat-ttgatttcatctctctctccctctctttccc---tctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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GAGGAAGGGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGgtgggtactgggtaggtgtttattcatgttgttattgttattatttttgtttttcttccaagtttctttgtagtttgttcctattttctgtttcgttt-ta-----------------------------------------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 3
-GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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AAGATCTTTGTCTGGAAACAGACATTGAAGGTC-ATGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAGATGTCCATTCAGTTATATAATTATGGAGAAGGgtgggtactgggtaggtgttat-atataagtaattatggaccaaaagataattagattatataaacacaccctaa-------tcacttaactt--------------atgattaaagatataattatttacaacacaagttattatgatcttgtgatgttcatgtgatatatctgcag------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 3
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
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GAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAAGATCCTGTTCGTAAATCTTTCAGCAAGATGTCTATTCAGTTATATAATTATGGCGAAGGgtgggtacttggtaggt-ccttaattactttttattatcatatatgtctgcatgaatatatgcagc--tcctgaccttattcaatattcact-----------gcaaattagcccaaaatagaaactatttatc-----ttcctctttttaagttt--gcaaaatatatt--tctggccaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719944|gb|FC068689.1|FC068689EST: AGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGG GTTGATGGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGA
genomic: AGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactg ... ttatgagcagGTTGATGGGGAAGGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGCAGAGTTGGAGAGTGTCTGGAAGAGATTGATGGTGAAGATCCTGTCAGAAAAGCCTTCAGCAAAATGTCCATTCAACTTTATAATTATGGAGAAGGgtgggtactgggtaggtgtttttatttgatttcatctctctctccctctctttccctctctccctcattccctccctctctctctctcaacaatagggaggaagcagaaaagtgaaaaaataaaaataaaaaacaaaaattcctctacatgggctttgataggatgaattgcttttatgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA