1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTAGATTTCCATGGGGATCAAGATCACTATCAGACAGTTCACAAAGCGAAGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCGgtaagtttcttcctgatcataaagatggaaaagtgcctgtgaaaacttcttttcaagatatgcttataacacaaggaaaagtgcatttttccttgatctt...
species | Vitis vinifera |
transcript | Vv18s0001g06900.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCCCCAACGCATTTGCAGCTTTTTGAATT-G AGGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATEST: gi|352765203|gb|FQ465900.1|FQ465900
genomic: TCCCCCAACGCGTTTGCAGCTTTTTGAATTCGgtaagtttct ... tggtcaacagA-GGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGAT
EST: AGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCG AGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATCEST: gi|352772878|gb|FQ470493.1|FQ470493
genomic: AGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCGgtaagtttct ... tggtcaacagAGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATC
EST: AGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCG AGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATC
genomic: AGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCGgtaagtttct ... tggtcaacagAGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGATTTCCATGGGGATCAAGATCACTATCAGACAGTTCACAAAGCGAAGAGGCCACCACTGTAGATCCCCCAACGCGTTTGCAGCTTTTTGAATTCGgtaagtttcttcctgatcataaagatggaaaagtgcctgtgaaaacttcttttcaagatatgcttataacacaaggaaaagtgcatttttccttgatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa