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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTTGGTGGAAGAACCGTGCACCTGTCAATCCTGACGCTGTTGTAGTAGTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAGgtgttgtttctgtgacattaaatattcactcttgcctagctttatttcaggcagtagtgtcacattttttcataggatcaatgtgattagcaccctcatgttgcttaaattttctatcctgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g08020.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010764|gb|BQ795798.1|BQ795798
EST:     GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAG                         ATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT
genomic: GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAGgtgttgtttc ... tatcctgcagATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT
EST: gi|33405772|gb|CF211399.1|CF211399
EST:     GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAG                         ATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT
genomic: GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAGgtgttgtttc ... tatcctgcagATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT
EST: gi|161719497|gb|FC067695.1|FC067695
EST:     GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAG                         ATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT
genomic: GTTGGCTTCTTATGTGCTTCTCTAATTGGCGGCTTCATGTACATCAACAGgtgttgtttc ... tatcctgcagATTGAAGCCCTCGAAGTCCATTAAGAAACAAACGAGTCAATCGGTGAAACT