1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGGCATTCTCTCTACTTGGGCCGGGTTGGCTCGCTAGGAGCACTGCACTTGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAGgtaataatacccttaaatacctatgtcagtggatttgcccatatttctagtactgaccgaaaactataaaaattgatgtgtag
species | Vitis vinifera |
transcript | Vv17s0000g05620.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAG CTGCAAGCTTGCCCTTGTTGTTCATTGATGGGGCTAAGTTTCACCACTTGAEST: gi|122691927|gb|EC985382.1|EC985382
genomic: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAGgtaataatac ... tgatgtgtagCTGCAAGCTTGCCCTTGTTGTTCATTGATGGAGCTAAGTTTCACCACTTGA
EST: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAG CTGCAAGCTTGCCCTTGTTGTTCATTGATGGAGCTAAGTTTCACCACTTGAEST: gi|349832518|gb|FQ421079.1|FQ421079
genomic: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAGgtaataatac ... tgatgtgtagCTGCAAGCTTGCCCTTGTTGTTCATTGATGGAGCTAAGTTTCACCACTTGA
EST: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAG CTGCAAGCTTGCCCTTGTTGTTCATTGATGGAGCTAAGTTTTACCACTTGA
genomic: TGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAGgtaataatac ... tgatgtgtagCTGCAAGCTTGCCCTTGTTGTTCATTGATGGAGCTAAGTTTCACCACTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGCATTCTCTCTACTTGGGCCGGGTTGGCTCGCTAGGAGCACTGCACTTGGAGCTTCCATAGCTTTCATGATCTATACACGCTCTACACACCCTCCAGgtaataatacccttaaatacctatgtcagtggatttgcccatatttctagtactgaccgaaaactataaaaattgatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT