Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAACTGAGGAATTCCTCTGGTGCCACAATCACAATTCTACCTCAAAATCAGTTGCCTTTGTGTGCATCTGCTCATGACTCTGATCGCATGGTACAGgtgagctcattttctttgtaattgttaaattgaactgagtttttgagcttgctgttatgtcatagtttttttatgttcaaccttttttatttttgggttttcaataaattgttcttttgcctaaatcaggttatgcttaggatgcctgttttcttctttcttttgctgagttatgttcaacattcatgttatactag

Basic information

species Vitis vinifera
transcript Vv15s0021g01940.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G48080.1 (Glycine max), 5'ss of exon 3
TGAAAAACTGAGGAATTCCTCTGGTGCCACAATCACAATTCTACCTCAAAATCAGTTGCCTTTGTGTGCATCTGCTCATGACTCTGATCGCATGGTACAGgtgagctcattttctttgtaattgttaaattgaactgagtttttgagcttgctgttatgtcatagtttttttatgttcaaccttttttatttttgggttttcaataaattgttcttttgcctaaatcaggttatgcttaggatgcctgttttcttctttcttttgctgagttatgttcaacattcatgttatactag
||| ||  ||||| | || ||||||||| | || ||  ||||  | | ||||||||||||||| ||||| ||||||||||| |||||  |  | || |||||||| |        |  |  |  | || ||    | ||| |  | | ||   ||| | ||  |     |  ||||         || |   | |   ||| ||                                                                                             
TGAGAAGTTGAGGGACTCTTCTGGTGCCTCTATTACTGTTCTTGCACCAAATCAGTTGCCTTTATGTGCTTCTGCTCATGAATCTGACAGAGTTGTGCAGgtgagatgtcgaaaatgatgctcatcaattt----ttagtatgagggattttggttttttctgaaacactcaatgtaaccttgccttcaccatagatattttaa---------------------------------------------------------------------------------------------