1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAGATTGGACCTGTCCTAAATGTGGGAACATGAATTTTGGGTTTAGAACTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCGgtatgtttgtggatgctttttctccattttttaaatttaatttcttttgtaataattatctgttttggttaggggtttggtagtgcatacacgaatggtt...
species | Vitis vinifera |
transcript | Vv15s0021g01650.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCG TCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGAEST: gi|110721133|gb|EE097779.1|EE097779
genomic: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCGgtatgtttgt ... aattttgcagTCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGA
EST: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCG TCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGAEST: gi|77587773|gb|DV223079.1|DV223079
genomic: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCGgtatgtttgt ... aattttgcagTCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGA
EST: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCG TCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGA
genomic: CTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCGgtatgtttgt ... aattttgcagTCTGCTCCTATTACTAGCCCTTATAATCACCCTCCTCCCTTTTATTTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGATTGGACCTGTCCTAAATGTGGGAACATGAATTTTGGGTTTAGAACTGTCTGCAATCGTGGAAAATGTGGTGCTCCTCGACCTCCAGCTACTCCGgtatgtttgtggatgctttttctccattttttaaatttaatttcttttgtaataattatctgttttggttaggggtttggtagtgcatacacgaatggtt
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