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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag

Basic information

species Vitis vinifera
transcript Vv14s0006g01660.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 3
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgca--agctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag
||||| |||||||| ||||| || ||||||||||| || || ||||||| |||||| ||||| || || || |||||||| || ||||| ||||| |   |  |  |   ||||  ||||      ||  |  |   |    ||| | |   ||     |   |||  | |  ||||     |||                                                             
GGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGgtagaggtgggctgcgcttcgttcaa----catcgcacgtgcaatctttgacacacc-tgaataattccctgttatttcatat---cccag-------------------------------------------------------------

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag
|| ||||||||||| |||||||| ||||||||||| ||||| || |||| |||||| |||||||| || || |||||||| || ||||| ||||| ||  ||  |||  |  |   | ||| ||||  |    | |  | ||  | |     |     ||| | |   | | | | |  ||||                                                             
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaa-tgtatatcgtggatgtacacaatctcgtacaattca--cttgggaca-----cataaacaattccagttgtgtgttatctcag-------------------------------------------------------------

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctg-----cttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgagg-----ttaaattatggttagtcaacttgaatatct----tgcag-
 | |||||||| |||||||| |||||||| || || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||||||||||      | ||  |||| |||     |||||| ||||||  || |||  ||||||| || |    ||| |||  |  || ||||  ||  ||  ||  |       ||| ||      |  | || ||||| |  || ||  ||  ||    ||||| 
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagct--tctcaggactctgtggcttgatttatggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 3
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctg-----cttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgag-----gttaaattatggttagtcaacttgaat----atcttgcag
|| |||||||| |||||||| |||||||| || || ||  ||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||||||||||      | ||  |||| |||     |||||| | ||||  || ||| ||| |||| || |    ||| |||| |  || |||| |||  ||  ||  ||      ||| ||      |  | || ||||| |  || ||  ||    ||  |||||
GGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGgcaagctgagtctttaatttttcattcagct--tctcaggattctgtggcttgatatacggtgtgacgctgtctgtcaatgtgaataagtttaggtgtggtatggtatgcttgattaagtaattctgcagttgtggtttgataaatttgatggttataatgcag

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag
||||||||||| || ||||| ||||||||||| || ||  |  |||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||| ||  |      ||   | |  |  || || |     |||||      | | | ||   |  |    |     | ||| ||| |  |   ||  |    || ||  | ||      |                                
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagtaatgtag-agcctaatgttcctgaaatt---actgttgtcgtatcttcgttattggtgtatctgaatctactgatttggcattactaaaacttttttccag-------------------------------

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ27991 (Selaginella moellendorffii), 5'ss of exon 2
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag
||||| ||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||| || ||||||||||| |||||||| ||||||     |   || | | |        |      |    ||  ||   | | |                                                                                              
GGATACGTTGGAAATAAATCGGCGGTCTTTCCCTTGCAGCTCCTGGGATTCGATGTTGATCCGATCAACTCCgtacagttctccaatcacacgggcaagagcaatgcgctcctcgcttttctcgttttcttttcccagtttg---tttag----------------------------------------------------------------------------------------------

upper sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ29421 (Selaginella moellendorffii), 5'ss of exon 2
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgcttatact--tcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgaggttaaattatggttagtcaacttgaatatcttgcag
||||| ||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||| || ||||||||||| |||||||||||||||     |   ||  || ||       | |       |    || |  |                                                                                                    
GGATACGTTGGAAATAAATCGGCGGTCTTTCCCTTGCAGCTCCTGGGATTCGATGTTGATCCGATCAACTCCgtacagttctccaatcacacaggcaagaccaatgcgctcctcgcttttctctttttcttttcccagtgcgtttag---------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715098|gb|EE092763.1|EE092763
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|71859315|gb|DT008370.1|DT008370
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGCTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|294966903|gb|GW839778.1|GW839778
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|37186505|gb|CF605858.1|CF605858
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|71863971|gb|DT013026.1|DT013026
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|71859789|gb|DT008844.1|DT008844
EST:     GGGCTATGATGTCGACCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
EST: gi|161712131|gb|FC061503.1|FC061503
EST:     GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAG                         GATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT
genomic: GGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctgct ... tatcttgcagGATACCCAACTTTTAAGGGCCAAGTTTTGAATGGACAGCAACTAGGAGATT