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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGgtatctgtcagtttatccagttacagcctacatttgtaaatttaagttccttactttgatcctttttttttgtaaatttcatattatgtgtgtgatgcct...

Basic information

species Vitis vinifera
transcript Vv13s0067g01900.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G02760.1 (Glycine max), 5'ss of exon 3
TGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGgtatctgtcagtttatccagttacagcctacatttgtaaatttaagtt--ccttactttgatccttt---ttttttgtaaatttcatattatgtgtgtgatgcct--------------------------------------------------------------------------
 |||||||||||||||||||||||  ||||||||   |||| | ||| ||||||| |||||  ||  ||||| |||||||||||||| ||| |||| ||||||    | |       || |  ||  || |     |  || ||| ||  |  |  ||   ||  ||   || ||  || | | |||||     || | |||                                                                             
AGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAATGGTCCTGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGgtaaaacttatgaggcacactagcatgctgctggattggatgtaacttaacagtggttctttctcttacattcttactagaatccatatagcaagtttcatgtactgctaatagatgcataatacagtttatgtttatcctttgcttatactgatctccttatccttttgagtttgcag

upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G35640.1 (Glycine max), 5'ss of exon 3
TGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGgtatctgtcagtttatccagttacagcctacatttgtaaatttaagttccttactt--tgatcctttttttttgtaaatttcatattatgtgtgtgatgcct
||||||||||||||||||||||||  ||||||||   || | | | | ||||||| |||||  ||  ||||| |||||||||||||| ||| |||| ||||||    | |              |  ||  | || ||||| ||| ||   ||     ||||    |||| |  |     |   |  ||   |   ||    
TGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAAGGGTCCCGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGgtaaaacttatgaggcatgccctaatgctgtagtt-taaatgtaactttgctatccaatgatttcattttctcatcttagtagcagaatcatttcaatatt-