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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaatatcatgttacttcaatttcagtatattttgaagtccatatgactagagaaaaaaaaagagtttaccttttttttttttttttttttaatat...

Basic information

species Vitis vinifera
transcript Vv13s0019g03960.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352782197|gb|FQ470099.1|FQ470099
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|351029666|gb|FQ427506.1|FQ427506
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|351025048|gb|FQ433465.1|FQ433465
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|294965935|gb|GW839274.1|GW839274
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATGTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAA
EST: gi|110711711|gb|EE088504.1|EE088504
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|30255027|gb|CB971474.1|CB971474
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|352769260|gb|FQ471409.1|FQ471409
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|110713047|gb|EE088636.1|EE088636
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|351023970|gb|FQ423393.1|FQ423393
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|30254970|gb|CB971417.1|CB971417
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|351029504|gb|FQ436898.1|FQ436898
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|110721939|gb|EE097735.1|EE097735
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
EST: gi|110711601|gb|EE088266.1|EE088266
EST:     AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTA                         GAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA
genomic: AGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaata ... aatatttcagGAAACCTCTGAAGTAAAACGTAAAAGTGCAAAGCGTACTTTCAAATCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTTCTTCAGAAAGCATTGAACATTTGAAAAACAGAAAACTAgtaagcaatatcatgttacttcaatttcagtatattttgaagtccatatgactagagaaaaaaaaagagtttaccttttttttttttttttttttaatat

- - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa