1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTTAGGGCTTCCAATCTCCGGACTGGGTTTCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgcttcttgtcatcctatatcagtgggctgaggactaaattagttttgtagaacatatctattacaacatgccaacgtattaaaatgttgcag...
species | Vitis vinifera |
transcript | Vv12s0057g01240.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351031552|gb|FQ459809.1|FQ459809
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCGAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351031792|gb|FQ460049.1|FQ460049
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351035408|gb|FQ459675.1|FQ459675
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAAGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351033918|gb|FQ462973.1|FQ462973
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|349822807|gb|FQ398194.1|FQ398194
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCACAAGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCTAGCCTATCAGAAAAGTGGAGCAGCTAGTCTTAGTGTTEST: gi|351038829|gb|FQ448472.1|FQ448472
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCCCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAATGTTEST: gi|351034477|gb|FQ463290.1|FQ463290
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|349821059|gb|FQ404312.1|FQ404312
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351039889|gb|FQ464927.1|FQ464927
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGAAGCAGCTTGTCTTAGTGTTEST: gi|110687718|gb|EE065446.1|EE065446
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|349810716|gb|FQ402959.1|FQ402959
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351048498|gb|FQ448772.1|FQ448772
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGGGAGGATTTTGATCCG GGTTGAA-TTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTEST: gi|352795534|gb|FQ480122.1|FQ480122
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagG-TTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|352789729|gb|FQ478544.1|FQ478544
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|110697753|gb|EE075019.1|EE075019
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351053257|gb|FQ459125.1|FQ459125
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351045623|gb|FQ440808.1|FQ440808
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351041749|gb|FQ455959.1|FQ455959
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCC GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGEST: gi|110691072|gb|EE068758.1|EE068758
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAG
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|352798538|gb|FQ480563.1|FQ480563
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351046111|gb|FQ442489.1|FQ442489
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAATGTTEST: gi|351054706|gb|FQ462736.1|FQ462736
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351055066|gb|FQ440405.1|FQ440405
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|349817938|gb|FQ407927.1|FQ407927
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAACGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAAAAAAGTGGAGCAGCTTEST: gi|110724707|gb|EE100769.1|EE100769
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|110709662|gb|EE085318.1|EE085318
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351055925|gb|FQ453386.1|FQ453386
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351044450|gb|FQ442981.1|FQ442981
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|161713572|gb|FC063401.1|FC063401
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351057250|gb|FQ450957.1|FQ450957
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCC-GAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351036912|gb|FQ459434.1|FQ459434
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTTEST: gi|351031889|gb|FQ460146.1|FQ460146
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
EST: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCG GTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
genomic: TGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgc ... gttgtgatagGTTGAAATTGCCCGAGCCTATGAGAAAGGTGGAGCAGCTTGTCTTAGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTAGGGCTTCCAATCTCCGGACTGGGTTTCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTGATCCGgtaaatatgcttcttgtcatcctatatcagtgggctgaggactaaattagttttgtagaacatatctattacaacatgccaacgtattaaaatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa