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GCAGATTGGGGAAGCGCTTAGAGCGAAATTGGGGAGTCTTGGTCGGCTTGTGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctttcttttactcacaagcgagctagagattgatgttgagagtgttccatgaggcattgtccttttgtgctgcattaagacaagcctcaggtg...
species | Vitis vinifera |
transcript | Vv11s0016g00900.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|30129010|gb|CB914349.1|CB914349
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|110701993|gb|EE080197.1|EE080197
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|110725486|gb|EE102039.1|EE102039
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCAACAAATAAAT
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGATTGGGGAAGCGCTTAGAGCGAAATTGGGGAGTCTTGGTCGGCTTGTGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctttcttttactcacaagcgagctagagattgatgttgagagtgttccatgaggcattgtccttttgtgctgcattaagacaagcctcaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa