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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATGGAGTTTCTAAGAAAACAGTTCCAGGAATTCATCTCAGGCCTCATGTCCTTGCCTGTAAACATACCCGGAACAAGGCTTTACAGATCTTTACAGgcaagttaatcgaattcattcttcatattccccaatctgtaccgagtactcttatgaataaaaggactaattagggttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02080.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G20690.1 (Glycine max), 5'ss of exon 3
AGAAATGGAGTTTCTAAGAAAACAGTTCCAGGAATTCATCTCAGGCCTCATGTCCTTGCCTGTAAACATACCCGGAACAAGGCTTTACAGATCTTTACAGgcaagttaatcga------attcattcttcatattccccaatctgtaccgagtactcttatgaataaaaggac--taattagggttgcag-------------
|||||||||  ||||||  ||||| || |||||||| |||||||||||||||||  | ||  ||||  |||| ||||| |  || ||   |||||| |||| || || ||  |      ||| |||  |    ||       |  |||  |||  | | ||||  |   |      ||| | |  | ||              
AGAAATGGAACTTCTAAAGAAACATTTTCAGGAATTTATCTCAGGCCTCATGTCTCTACCAATAAAACTACCAGGAACTAAACTCTATCAATCTTTGCAGgtaacttcattaattagatattgatttctttctttttttttaccatac-aagtcatgtcatgatcatgggcctggcaataatgacttcactttttggttttag