1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATGAAGGACAGCGTGACATGCTTTACAACCAAACATTCAACCTTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgctaatcgttgtgatgatgattcacacatacaagtatttgtgtatgtatatatgtatctatagatggttccccccattttttcaggtggtgc...
species | Vitis vinifera |
transcript | Vv08s0007g02300.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACTEST: gi|33404120|gb|CF209747.1|CF209747
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGGATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACTEST: gi|110686349|gb|EE063885.1|EE063885
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACTEST: gi|110690195|gb|EE067084.1|EE067084
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACTEST: gi|71859039|gb|DT008094.1|DT008094
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACTEST: gi|71868774|gb|DT017829.1|DT017829
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
EST: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACT ATGACAGCTTTGAAAGCTGCAAACAAGGATTTGAAAGGAATGATGAAGACT
genomic: TTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgc ... ttcttttcagATGACAGCTTTGAAAGCTGCAAACAAGGAGTTAAAAGGAATGATGAAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGAAGGACAGCGTGACATGCTTTACAACCAAACATTCAACCTTGACCAAGTTTCATTTGCGGCTGAAGGAATTAAAGATGCTCAGCAAACTgtaagtgtgctaatcgttgtgatgatgattcacacatacaagtatttgtgtatgtatatatgtatctatagatggttccccccattttttcaggtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc