Sequence
atgc intronic sequence ATGC exonic sequenceTGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaataattgaaacttttatatagaattttcctgggtaatccagtatgttaaactaaatatatccagtaagctgtttatttaattttacagactagtgtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 3
TGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaataat---tgaaacttttatatagaattttcctgggtaatccagtatgt-taaactaaatatatccagtaagctgtttatttaattttacagactagtgtc
|||||| |||||||| || |||||||| ||||||||||| || || ||||| |||||||| ||||||| || |||||||| ||||| | || ||| ||| || | || | | | | | || |||| | || | | | || | | | ||
TGATGGGAAGCTTGAGATTGTGGTTCCGTCTTTTGTTCACTACCTTGAGGTTCTAGAAGGTGCTGATGGGGACAAAATGCCAGgtaaaagaatgtggggttttagtatttttcttattgtgataggcttgggtccatgagcttgggatatttatagag--gatgaactatgtgcgccttcccttg--
upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 3
TGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaata-attgaaacttttatatagaattttcctgggtaatccagtatgttaaactaaatatatccagtaagct--gtttattta-attttacagacta-gtgtc-
|||||| |||||||| || |||||||| ||||||||||| || || ||||| |||||||| ||||||| || |||||||| ||||| | | || ||| || ||||| || || | ||| | | | || || | |||| | |||||| | | | |||| |||
TGATGGGAAGCTTGAGATTGTGGTTCCGTCTTTTGTTCACTACCTTGAGGTTCTAGAAGGTGCTGATGGGGACAAAATGCCAGgtaaaagaatgtggggttt---tactatttttct---tattgtggtaggcttgggttgatgatgccgatgagcttgggatatttatagaggataaactatgtgctc
upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G09090.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgta----ataattgaaact-tttatatagaattttcctgggtaatccagtatgttaaactaaatatatccagtaagctgtttatttaattttacagactagtgtc------------------
||||||||||||||| || || ||||| |||||||||||||| || || || | ||||| |||||||||| || ||||| |||| ||| | | | |||| | | |||| | | | || | | | | || | ||| | || | || | || || ||
TGATGGAAAGCTTGACATTGTTGTTCCATCTTTTGTTCATTACCTCGAAGTTCTTGAAGGAGCTGATGGAGACAAGATGCCAGgtacaagatatcttatcttctttacctttagctttctgaaattttattttgtgctttgttcatttgatgctgtagaatattaaggattttgaaaaggttactgatgctctcataaatttctag
upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S334_25V6.1 (Physcomitrella patens), 5'ss of exon 3
TGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaataattgaaacttttata-tagaattttcctgggtaatccagtatgttaaactaa-atatatccagt--aagctgtttatttaattttacagactagtgtc
||||| || || || || || |||||||| ||||| ||||| ||||| || |||||||| ||||||||||| || |||| ||| | | | || | | ||| | | ||||| || || || || | | || || | | | | | ||
AGATGGCAAACTGGAAATTGTTGTTCCTTCCTTTGTACATTACCTGGAAGTTTTAGAAGGCTCTGATGGAGAAAAGCTGCCAGgtgactcctctccccattccactctcattgcgttaaatgccgaagtatactactcttgtgtagatttattccaaattgatgactaatcaatggtaaccgc----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691695|gb|EC982313.1|EC982313EST: TGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTG GCTGGCCTGCATTTCACCAGTCAACTGTCCATTCCAGTCCTCTTCTGTATG
genomic: TGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaataattg ... tacatatcagGCTGGCCTGCATTTCACCAGTCAACTGTCCATTCCAGTCCTCTTCTGTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGGAAAGCTTGATATAGTGGTTCCTTCTTTTGTTCATTATCTGGAGGTCTTAGAAGGTTCTGATGGAGATAAAATGCCTGgtaataattgaaacttttatatagaattttcctgggtaatccagtatgttaaactaaatatatccagtaagctgtttatttaattttacagactagtgtc
- - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa