1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGTTTTTTGATCACATTATAAGGAGGCTTGGATTGAAGACCCACTTGCATTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTGgtgagcaatcaaacacccctcagttccattgctaatagttaaacttttccaaggaaaataaaggaaaaggaaacagaaatgtttgatgtgttaacccatttaattattggaatcctcaatgttggattttaattccag
species | Vitis vinifera |
transcript | Vv07s0129g01100.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTG ATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGCEST: gi|110392748|gb|EC957095.1|EC957095
genomic: TTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTGgtgagcaatc ... ttaattccagATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGC
EST: TTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTG ATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGCEST: gi|45368096|gb|CK906455.1|CK906455
genomic: TTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTGgtgagcaatc ... ttaattccagATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGC
EST: TTGGGAG-TTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTG ATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGC
genomic: TTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTGgtgagcaatc ... ttaattccagATTCGAGGTTCTTGTGTTATCTTCCTTCCACCTTAGCTACTGCAACCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTTTTTTGATCACATTATAAGGAGGCTTGGATTGAAGACCCACTTGCATTGGGAGTTTCTGGAGAGGTGTGAGCGCCTTCTCCTCTCTGTCATTGCTGgtgagcaatcaaacacccctcagttccattgctaatagttaaacttttccaaggaaaataaaggaaaaggaaacagaaatgtttgatgtgttaacccatttaattattggaatcctcaatgttggattttaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC