Sequence
atgc intronic sequence ATGC exonic sequenceGTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 3
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatt----------tttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctct-----------catcaataactaacatt-tcaatcaaacaaagaagtaaa-----------------------------------------------------
|||||||| | || |||||||| ||||| ||||| || |||||||||||||| ||||| |||||||| || || ||||||||||||||||| || | || || | || || || |||| | ||| | | | ||| | || | || || | | || |||| | |
GTTGAGCTGTGTACTATTGATGGTTTGGTTAAGGAAAGCACTCAGTGTGCCCCTAATGGATACTATTTTATCCCAGTCTATGACAAGgtattgatcttgtgcttagcatttattttgggttttggccttgataaatgctctggaaacttccgtaaaattaagaaagaaaacataactagatgaccttattactctgacaagattctcagcattatcatatggaagataatattctgttctttttgttgttttcacgccacag
upper sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G40520.1 (Glycine max), 5'ss of exon 3
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa------------------------------------
|||||||||| || | |||||| |||| ||||| ||||| || ||||| |||||||| |||||||| ||||| || |||||||||||| | | | |||| || |||| || | | ||| | | ||| | | || | | | | | ||
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagcatatttgggcaacttctgtcttcataaatacagaatggcatatatatgccttagatgtgaatatattattcagtttttctcaatgcaattattttcattccag
upper sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgta-----tttttaaa-------acaat--agtgtggttca-----ttctgcatgaatgagtagaaaatg---tagttgcctctcatcaataactaacatttcaatcaaa--caaagaagtaaa-----------
|||||||||| || | |||||| |||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || |||||||||||| | || || ||| | ||| | || ||||| | || | || | |||| || | || | | | | | |||| | ||| | | | |
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag
upper sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa
|||||||||| ||| | ||||||||||| || ||||| || ||||||||||||||||||||||||||||| || || |||||||||||||| | | || | | || | | || | | || | | || | || | || | | | |
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgtattcatcatacccttttcggggttaatcggtgt---tgcatttattctgcaagtgatttctatgctttcttctcgtag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967164|gb|GW840039.1|GW840039EST: AACTCAGTGTGCCCCGAAATGGTTACTATTTCATTCCTGTCTATGAGA-G GGTTCTTTTGTAGTCCAAATCAAGGAAC-AGAAGGATGGTCATTGGACCCT
genomic: AACTCAGTGTGCCCC-AAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaa ... tcttttgcagGGTTCTTTTGTAGTCCAAATCAAGGGACCAGAAGGATGGTCATTGGACCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgtatttttaaaacaatagtgtggttcattctgcatgaatgagtagaaaatgtagttgcctctcatcaataactaacatttcaatcaaacaaagaagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagtaa