Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacatcctcaaggttcaatttgagaaagtaccattttcttttatctacgagtgtacaatcattacattttttattgacagtgaaaactgcactca...

Basic information

species Vitis vinifera
transcript Vv06s0004g04460.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 3
GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgtt-ggtacat--------------cctcaaggttcaatttgagaaagtaccattttcttttatctacgagtgtacaatcattacattttttattgacagtgaaaactgcactca----------
|||||||| ||||| || |||||||||||||||||||| || |||||||||||||| ||||||   |||||||||||  || |  |              | || || || |  | ||| || ||    ||| | || | |   |    | || ||||    ||| ||   ||  |  |   ||    |           
GTTGAATCTACACTAGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatgttgttggttattaggcatccagtttgatctcgagtaaatattgattt-tgttgtatgttaaaacaaaagcattgttctttcta--aactattcattttgttgccctctttttaag

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 3
GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgt--------tggtacatcctcaag-gttcaatttgaga--aagtac-cattttcttttatctacgagtgtacaatcattacattttttattgacagtgaaaactgcactca----------
|||||||| ||| |||| |||||||||||||||||||| || |||||||||||||| ||||||   |||||||| ||        | ||   |  | |||  |||| |||||     ||||   |||   |||  | ||||     ||||        || ||| |  ||  |  |   ||    |           
GTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAgtgagggatgttgttggttattaagcattcagtttgatgtcgagtaaatattgattttgttgtacgttaaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaag

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacatcctcaaggttcaatttgagaaagtaccattttcttttatct-acgagtgtacaatcattacattttttattgacagtgaaaactgcactca
|||||||||||||| || ||||||||||||||||| || ||||| || |||||| || | ||    || ||||||||               |||   || || | || |  | || ||| |   | |||||| |  | |  ||   | | || |||    |  |           
GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgt-------------gagtttctttggatagagaatgagttacttgtggatgacgagtctg-atttgtttgttctgtttttggatatatag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814872|gb|FQ410095.1|FQ410095
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351048056|gb|FQ441228.1|FQ441228
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351038970|gb|FQ457645.1|FQ457645
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349821185|gb|FQ408772.1|FQ408772
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351053570|gb|FQ462645.1|FQ462645
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351035254|gb|FQ458611.1|FQ458611
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349808994|gb|FQ407443.1|FQ407443
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351037204|gb|FQ457037.1|FQ457037
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349809519|gb|FQ414409.1|FQ414409
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349822872|gb|FQ398259.1|FQ398259
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349824427|gb|FQ417814.1|FQ417814
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349817462|gb|FQ407252.1|FQ407252
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349825681|gb|FQ421780.1|FQ421780
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349815532|gb|FQ400688.1|FQ400688
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349832322|gb|FQ420883.1|FQ420883
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351042878|gb|FQ451172.1|FQ451172
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349829872|gb|FQ422185.1|FQ422185
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349809169|gb|FQ398942.1|FQ398942
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349815709|gb|FQ400865.1|FQ400865
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351053158|gb|FQ455615.1|FQ455615
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349816846|gb|FQ399714.1|FQ399714
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|352790292|gb|FQ481491.1|FQ481491
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351022475|gb|FQ446997.1|FQ446997
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|110373005|gb|EC937208.1|EC937208
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|18458571|gb|BM436849.1|BM436849
EST:     AGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: AGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349808495|gb|FQ405639.1|FQ405639
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351052838|gb|FQ456566.1|FQ456566
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGGTATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351024245|gb|FQ423668.1|FQ423668
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351033979|gb|FQ463034.1|FQ463034
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349823559|gb|FQ414969.1|FQ414969
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|110711190|gb|EE087433.1|EE087433
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCNAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349819385|gb|FQ412279.1|FQ412279
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|30327231|gb|CD010493.1|CD010493
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351025288|gb|FQ434301.1|FQ434301
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|32269560|gb|CD718719.1|CD718719
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349813816|gb|FQ414050.1|FQ414050
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|110394254|gb|EC958925.1|EC958925
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351037566|gb|FQ462549.1|FQ462549
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351025464|gb|FQ435156.1|FQ435156
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|352799049|gb|FQ480898.1|FQ480898
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|352791382|gb|FQ480961.1|FQ480961
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351019788|gb|FQ439605.1|FQ439605
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351027277|gb|FQ444526.1|FQ444526
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|352786390|gb|FQ478999.1|FQ478999
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|351038919|gb|FQ457594.1|FQ457594
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|110374436|gb|EC939192.1|EC939192
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|352763817|gb|FQ473520.1|FQ473520
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACT
EST: gi|351053162|gb|FQ455619.1|FQ455619
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|27585311|gb|CB008006.1|CB008006
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|33402160|gb|CF207787.1|CF207787
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAAT
EST: gi|349815482|gb|FQ400638.1|FQ400638
EST:     ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAG                         GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGGTTAA
genomic: ATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacat ... ttctcttcagGAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGG-TTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacatcctcaaggttcaatttgagaaagtaccattttcttttatctacgagtgtacaatcattacattttttattgacagtgaaaactgcactca

- - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaaa