1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACAGCATTTAATGATGTTTACATTGCATATGAGCTAATGGATACTGACCTTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagtttaaacatttagttggtaaaaccaacctatttcatttttctttcgtccttgatgaagagataaaaatacaagtcaactatatatggaaggca...
species | Vitis vinifera |
transcript | Vv05s0094g00900.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTTCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATEST: gi|161717363|gb|FC065278.1|FC065278
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATEST: gi|71876332|gb|DT025387.1|DT025387
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATEST: gi|161714347|gb|FC062648.1|FC062648
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATEST: gi|161717362|gb|FC065277.1|FC065277
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
EST: TTCATCAAATCATTCGTTCCGATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAEST: gi|161716253|gb|FC068076.1|FC068076
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAA
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATEST: gi|110713988|gb|EE090389.1|EE090389
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
EST: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAG TATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
genomic: TTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagttt ... ttttgtgcagTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGCATTTAATGATGTTTACATTGCATATGAGCTAATGGATACTGACCTTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGgttctagtttaaacatttagttggtaaaaccaacctatttcatttttctttcgtccttgatgaagagataaaaatacaagtcaactatatatggaaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata