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TGCTGCTAAAGACATCAGATTCGGGGTTGAGGCTCGAGCCTTGATGCTTAAGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttcttttctaactatgcgatgcagttccttcaacccattgcggatgctatcgctgatgtagtaaaaaaaggggacttttgaacaaaaaatgtgt...
species | Vitis vinifera |
transcript | Vv05s0051g00340.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAEST: gi|30300026|gb|CB976820.1|CB976820
genomic: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
EST: GAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAEST: gi|110690897|gb|EE068383.1|EE068383
genomic: GAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
EST: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGTCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAEST: gi|71859154|gb|DT008209.1|DT008209
genomic: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
EST: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAEST: gi|110731644|gb|EE106246.1|EE106246
genomic: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
EST: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAAEST: gi|71859121|gb|DT008176.1|DT008176
genomic: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
EST: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAG GGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
genomic: AGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttct ... ttgtttccagGGGCGTAACGTGGTACTAGAGCAAAGTTTTGGTGCCCCAAAAGTGACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCTAAAGACATCAGATTCGGGGTTGAGGCTCGAGCCTTGATGCTTAAGGGCGTGGAAGAGCTCGCAGATGCTGTTAGAGTCACCATGGGCCCCAAGgtaaacttcttttctaactatgcgatgcagttccttcaacccattgcggatgctatcgctgatgtagtaaaaaaaggggacttttgaacaaaaaatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat