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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTGgtatgctgttgtctttatttaagtaaaaaccccgaagaattcatgattgtttgagattcatcaatgaaagattgttttcaactctcatatcacttactaataattgaaatggtgccaatcatgctttacactatttag

Basic information

species Vitis vinifera
transcript Vv05s0049g01850.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G34240.1 (Glycine max), 5'ss of exon 3
TACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTGgtatgctgttgtctttatttaagtaaaaaccccgaagaattcatgattgtttgagattcatcaatgaaagattgttttcaactctcatatcacttactaataattgaaatggtgccaatcatgctttacactatttag
|||||| ||||||||  ||||||| || ||||||||||| ||||||||||| |||||| ||||| |||||||||||||      ||    ||| ||    |    | |   ||   ||    | ||| |||      | |  |||      |||     |  ||  ||  | | ||| ||| |  |||| || ||||   | ||| ||   
TACGTTAAAACATGGAGTATCACTTCGTACACTTATTCGCAAGAGTGCTGAGCTTTCTTGTCCTGGTTTGCTGgtatg------tcaacctttcagagctattttccagttatg-gtgtacatgtgatatttgcttgttactgat------caaggtgtagttcctttgttgacaat-gaattattgcctattatgca--aaactgttag-

upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G33400.1 (Glycine max), 5'ss of exon 3
TACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTGgtatgctgttgtctttatttaagtaaaaaccccgaagaattcatgattgtttgagattcatcaatgaaagattgttttcaactctcatatcacttactaataattgaaatggtgccaatcatgctttacactatttag
|||||| ||||||||  | ||||| || ||||||||||| ||||||||||| |||||| ||||| |||||||||||||       ||||     ||  |    || |      |   |    | ||| ||| |  |     ||||      |||     |  ||  ||  | | ||| ||| |  ||||  | ||     | ||| ||   
TACGTTAAAACATGGAGTTTCACTTCGTACACTTATTCGCAAGAGTGCTGAGCTTTCTTGTCCTGGTTTGCTGgtatgtca--accttt--cagagctattttcctgtta---tggcgtgcatatgatatttactagatgcagat------caaggtatagttcctttgttgacaat-gaattattgcc--ttatatgcaaaactgttag-

upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G21320.1 (Glycine max), 5'ss of exon 4
TACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTGgtatgctgttgtcttt--atttaagtaaaaaccccgaagaattcatgattgtttgagattcatcaatgaaagattgttttcaactctcatatcacttactaataattgaaatggtgccaatcatgctttacactatttag
||||||||||||||| ||||| || || |||||| |||| || |||| | | |||||||||||| |||||||||||||    | | ||      ||| || |   |       ||   || ||||| ||||||     ||   |||||  | |  | | |  ||    | || |   |||       ||| |   ||  |  | |  ||||||
TACGTTGAAACATGGCATATCGCTTCGTACACTTCTTCGCAACAGTGATAAACTTTCTGGTCCTGGTTTGCTGgtatgtcaatcttttatggactaaatacatgtcttttgttatg-gtgtttgttggagattttctgattgcagattaatgt--attattctaatgttgacaatgtatt-------tgcgatctattttacaaaacatttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689747|gb|EC943735.1|EC943735
EST:     TCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTG                         ATTGTCGGAGACATGCAAGGTGCTGTGTTTGGGGGCCTG
genomic: TCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTGgtatgctgtt ... cactatttagATTGTCGGAGACATGCAAGGTGCTGTGTTTGGGGGCCTG