1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGACTGGAGTGGAGGAGAAGAGGGCTAAAGTGCAGAAGGAGTCCAAAATTCTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttctaaagcgttctgtctatgtgtttgtttcaatttgggtttgttggtgaaattcttcatttatggttggaaatatgctttttgtag
species | Vitis vinifera |
transcript | Vv05s0049g01470.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGAEST: gi|349815651|gb|FQ400807.1|FQ400807
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGAEST: gi|351044677|gb|FQ443208.1|FQ443208
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGGCTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGAEST: gi|349812781|gb|FQ410423.1|FQ410423
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGAEST: gi|110718784|gb|EE096009.1|EE096009
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: TTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTTGAAA-G AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAAATGGEST: gi|110730524|gb|EE107704.1|EE107704
genomic: TTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTT-GAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGG
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAAGCTGACTTATTTGAAA-G AACTCTTGCACAGCTGGGAGATGATGTANCTCCCTGTGAAGCTCAGAGGGAEST: gi|351044047|gb|FQ452720.1|FQ452720
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCCCCCTGTGAGGCTCAGATGGAEST: gi|110687005|gb|EE064039.1|EE064039
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGAEST: gi|351032507|gb|FQ458872.1|FQ458872
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
EST: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAG AACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGCGAGGCTCAGATGGA
genomic: CTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttcta ... ctttttgtagAACTCTTGCACAGCTGGAAGATGATGTAGCTCCCTGTGAGGCTCAGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTGGAGTGGAGGAGAAGAGGGCTAAAGTGCAGAAGGAGTCCAAAATTCTTCTTGATTACACCCGAAAAGCAATTGCAAGGCTGACTTATTTGAAAAGgtcagttctaaagcgttctgtctatgtgtttgtttcaatttgggtttgttggtgaaattcttcatttatggttggaaatatgctttttgtag
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