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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcagctctcccctgatgcatttactagcacaaattctatttatttcattaatccatgttctattgtag

Basic information

species Vitis vinifera
transcript Vv03s0063g00850.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585725|gb|CB008420.1|CB008420
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30127264|gb|CB912603.1|CB912603
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110358590|gb|EC922912.1|EC922912
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|46918297|gb|CN547626.1|CN547626
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110365355|gb|EC928212.1|EC928212
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30253349|gb|CB970900.1|CB970900
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30253272|gb|CB970823.1|CB970823
EST:     TGCAGTGGCCCAAGGTTCCCAGGCTAATGGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGGANATCTCAGGCAG
genomic: TGCAGTGGCCCAAGGTTCCCAGGCTAATGG-CGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30301226|gb|CB978020.1|CB978020
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGGAGGACTTGACTCTGAGGTCA
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGG-AGGACTTGACTCTGAGGTCA
EST: gi|110716935|gb|EE092352.1|EE092352
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACG                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110358130|gb|EC922123.1|EC922123
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110385108|gb|EC949601.1|EC949601
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110385313|gb|EC949825.1|EC949825
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110702788|gb|EE079064.1|EE079064
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACG                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCANGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110357598|gb|EC921807.1|EC921807
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110359944|gb|EC922319.1|EC922319
EST:     GGGCAGTGGCCCAAGGTTCCCAGGGTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCA
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGA-GGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCA
EST: gi|110372319|gb|EC936474.1|EC936474
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110364091|gb|EC927736.1|EC927736
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110378975|gb|EC944138.1|EC944138
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110360333|gb|EC923326.1|EC923326
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30135627|gb|CB920965.1|CB920965
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30134056|gb|CB919394.1|CB919394
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|351022708|gb|FQ428617.1|FQ428617
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30301155|gb|CB977949.1|CB977949
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30129471|gb|CB914810.1|CB914810
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|161713787|gb|FC063781.1|FC063781
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30132800|gb|CB918139.1|CB918139
EST:     GCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|110696914|gb|EE073445.1|EE073445
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
EST: gi|30124953|gb|CB910292.1|CB910292
EST:     GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACA                         ATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG
genomic: GTGCAGTGGCCCAAGGTTCCCAGGCTAATGGCGACTCAACTAATACAACAgtgagttcag ... tctattgtagATATTTGTGGGAGGACTTGACTCTGAGGTCACCGATGAAGATCTCAGGCAG