1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCCGCCCAGAATGTGGAGAGCTCTCACTGTATCACCATGATGGAGGCTGTCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatccaaaccctctaaccctaccatattgaatttctgaaaaaaaatggttcaaatcaagaactgtgatactgggactaattaatttctaactattgtgtttgaattcag
species | Vitis vinifera |
transcript | Vv03s0038g04100.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAG GTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTGEST: gi|352773613|gb|FQ472395.1|FQ472395
genomic: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatc ... ttgaattcagGTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTG
EST: TCAACGATGGAAAAGACCTCCACGTCTCAGTCCCCATGCCCTCTATCGAG GTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTGEST: gi|352773005|gb|FQ470620.1|FQ470620
genomic: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatc ... ttgaattcagGTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTG
EST: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAG GTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTGEST: gi|352781767|gb|FQ469065.1|FQ469065
genomic: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatc ... ttgaattcagGTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTG
EST: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAG GTTGGCACAGTGGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTG
genomic: TCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatc ... ttgaattcagGTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCGCCCAGAATGTGGAGAGCTCTCACTGTATCACCATGATGGAGGCTGTCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGgtaattaatccaaaccctctaaccctaccatattgaatttctgaaaaaaaatggttcaaatcaagaactgtgatactgggactaattaatttctaactattgtgtttgaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA