1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCGTCCAGCTCAGAAATTGGTAGAATTTTTGATGTTTTGAATGCACTTGGGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaatcacatagcttaccttcattcttcttgttctgtattttttttatttttttttatttcttgtatttggataatatttcaaatggttgaaaac...
species | Vitis vinifera |
transcript | Vv03s0038g03530.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|71858384|gb|DT007439.1|DT007439
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|161712461|gb|FC061766.1|FC061766
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|161714507|gb|FC062957.1|FC062957
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|33406115|gb|CF211742.1|CF211742
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|71859535|gb|DT008590.1|DT008590
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|71856530|gb|DT005585.1|DT005585
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: CAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAGEST: gi|71890790|gb|DT039845.1|DT039845
genomic: CAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
EST: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAG GCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
genomic: GGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaat ... ttttttgcagGCCACAATGCCATCTGATGAGAAGCATCCATCACATGTGCCAATGTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTCCAGCTCAGAAATTGGTAGAATTTTTGATGTTTTGAATGCACTTGGGATCATTGCTTTTGCCTTCAGAGGCCACAACCTCATCCTTGAGATTCAGgtatgtcaatcacatagcttaccttcattcttcttgttctgtattttttttatttttttttatttcttgtatttggataatatttcaaatggttgaaaac
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