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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgtatgcttaatttttatctgaatgtgccatatgcaaacattgtgtatcaaatgaagaatctttaccatgacaaccattacttcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00070.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 4
TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgt-----atgcttaatttttatctgaatgtgccatatgcaaacattgtgtatcaaatgaagaatctttaccatgacaaccattacttcag
 || ||||| || ||||| || ||||||||||| |||||| |||||||||||||| |||| || |||||||||||||| ||||| || ||||||||||||||     | |  ||| | || | ||  |   | |||        || ||   |   |||| ||| | || ||   ||             
AGCTGGTGGAGGGAAGAGTCTATGTTACCAGCTCCCAGCTGTACTTCGTGATGGAATTGCACTGGTTGTCAGTCCTTTACTTTCCCTTATTCAGGACCAGgtggttaaagtgtaaatattttttggtttccctatacatccttgttctgatcct--tgaaaaatttatatcaatccag------------

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 3
TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgtatgcttaatttttatctgaatgtgccatatgcaaacattgtgtatcaaatgaagaatctttaccatgacaaccattacttcag------------------------------------
|||||||||||| |||||||| || ||||||||||| ||| | |||||||||||| ||||||| ||||||||||||||||||||  | ||||| || |||||    || |||   || | ||  | | |||  |||   ||  ||    |||||| ||| | |   ||   ||   |   ||| |                                    
TGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGgtgcatttcatt---atgttaaaatccaata--caagtttttggtc---aatgaaaaatttcttgaatttaaaatgtgttttctgcctcttttattcccctgggtggggggattgcttcag

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgtatgcttaatttttatctgaatgtgccatatgcaaaca--ttgtgtatcaaatgaagaat-ctttaccat--gacaaccattacttcag--------------------------------------
 ||||||||||| ||||| ||||| || || ||||||||||| ||||||| |||     ||||||||||||||||| | ||||| ||||||||||| |||||  |    |   |||| ||||  |    | || |  ||   | | |    |||||  ||  ||| | | |  || |  | ||  ||                                         
AGCAGGTGGTGGGAAGAGTCTTTGCTATCAACTTCCAGCTATGCTTCGTGGTGGGACAACTCTTGTTGTCAGTCCTCTACTTTCACTGATTCAGGATCAGgttagtactaaacttat-tgaaaatagtctgtgtaggcaacctatttgcagaatgattaacacttgatcgttagatattctttgattagtatgtgtgttatgaccaattattgcttatgattgttcag

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G31360.2 (Arabidopsis thaliana), 5'ss of exon 3
TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgtatgcttaatttttatctgaatgtgccatatgcaaaca--ttgtgtatcaaatgaagaat-ctttaccat--gacaaccattacttcag--------------------------------------
  |||||||||| ||||| ||||| || || ||||||||||| ||||||| |||     ||||||||||||||||| | ||||| ||||||||||| |||||  |    |   |||| ||||  |    | || |  ||   | | |    |||||  ||  ||| | | |  || |  | ||  ||                                         
--CAGGTGGTGGGAAGAGTCTTTGCTATCAACTTCCAGCTATGCTTCGTGGTGGGACAACTCTTGTTGTCAGTCCTCTACTTTCACTGATTCAGGATCAGgttagtactaaacttat-tgaaaatagtctgtgtaggcaacctatttgcagaatgattaacacttgatcgttagatattctttgattagtatgtgtgttatgaccaattattgcttatgattgttcag

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S93_66V6.1 (Physcomitrella patens), 5'ss of exon 4
TGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGgtatgctt--aatttttatctgaatgtgccatat-gcaaacattgtgtatcaaatgaaga-atctttaccatgacaaccattacttcag-------------------------------------------------------------
 ||||||||||| ||||| ||||| |||||||| ||||||||  | |||  ||||   || |||||  |||| ||| | || || || || || |||||||||||||   |  ||  |||| ||     | ||| |  ||  ||   ||  |    | |  | |  |  | |     || | | ||                                                                
AGCAGGTGGTGGGAAGAGTCTTTGCTACCAGCTCCCAGCTATGTTACGTACTGGAACGGCACTTGTCATCAGCCCTCTACTATCCCTCATCCAAGACCAGgtatgctctcatgttccatctaaacacagcttattgttaaagttcaatagtattctaggccagcgctttcgttgttgccgtaatttagcattgtaactaccctctatgtttgtgtcctccaaacattcttagttaagtttatgtatgtag