Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatatatattttctaaattataattccatcatgttaacaagtcaattgcatgattcttttcagatgacctctacccatttgagatctcccaaggt...

Basic information

species Vitis vinifera
transcript Vv01s0150g00190.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823458|gb|FQ414868.1|FQ414868
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110699485|gb|EE076526.1|EE076526
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161716681|gb|FC067479.1|FC067479
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110719084|gb|EE096653.1|EE096653
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161715687|gb|FC068382.1|FC068382
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110697187|gb|EE073956.1|EE073956
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110719983|gb|EE095565.1|EE095565
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161715884|gb|FC065503.1|FC065503
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161710276|gb|FC058974.1|FC058974
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|351024148|gb|FQ423571.1|FQ423571
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGACCAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110357208|gb|EC920582.1|EC920582
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110685775|gb|EE062800.1|EE062800
EST:     TTTTACC-GAAAGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTACCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: TTTT-CCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|77582243|gb|DV220085.1|DV220085
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|351033461|gb|FQ462112.1|FQ462112
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|294964050|gb|GW837853.1|GW837853
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|349824896|gb|FQ406475.1|FQ406475
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|294964024|gb|GW836899.1|GW836899
EST:     ATTTTCCTGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGGACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110700295|gb|EE078171.1|EE078171
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|352772254|gb|FQ469779.1|FQ469779
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161711409|gb|FC060407.1|FC060407
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGC
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGC
EST: gi|161716039|gb|FC067160.1|FC067160
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|71864767|gb|DT013822.1|DT013822
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGTAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161713242|gb|FC064009.1|FC064009
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110684980|gb|EE062879.1|EE062879
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110703972|gb|EE081374.1|EE081374
EST:     ATTTTCCAGAAAGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161706016|gb|FC054922.1|FC054922
EST:     ATTTTCCAGAACGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161709715|gb|FC058446.1|FC058446
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAA
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAA
EST: gi|161705707|gb|FC056616.1|FC056616
EST:     CAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: CAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|71860947|gb|DT010002.1|DT010002
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTG
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTG
EST: gi|161718359|gb|FC066301.1|FC066301
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161712998|gb|FC062420.1|FC062420
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110404686|gb|EC970132.1|EC970132
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110733171|gb|EE109127.1|EE109127
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161715902|gb|FC069087.1|FC069087
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110710945|gb|EE087578.1|EE087578
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAAC--T-CAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110713755|gb|EE089953.1|EE089953
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161718437|gb|FC067294.1|FC067294
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|33409793|gb|CF215420.1|CF215420
EST:     ATGTTCCAGAAGGCGATATCATCTTCCAGTGCTTACTATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110686358|gb|EE063902.1|EE063902
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161716680|gb|FC067478.1|FC067478
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|71856507|gb|DT005562.1|DT005562
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110692523|gb|EE071865.1|EE071865
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110697979|gb|EE075469.1|EE075469
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACGGTGCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110700894|gb|EE077950.1|EE077950
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|30252911|gb|CB970462.1|CB970462
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110401690|gb|EC968306.1|EC968306
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110720839|gb|EE097110.1|EE097110
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110359115|gb|EC920067.1|EC920067
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110700272|gb|EE078124.1|EE078124
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161719721|gb|FC066678.1|FC066678
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAATAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161712571|gb|FC062173.1|FC062173
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161712714|gb|FC062286.1|FC062286
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110685495|gb|EE062275.1|EE062275
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161712846|gb|FC062021.1|FC062021
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|71858179|gb|DT007234.1|DT007234
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161716632|gb|FC069139.1|FC069139
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|110709919|gb|EE085799.1|EE085799
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
EST: gi|161707465|gb|FC057367.1|FC057367
EST:     ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAG                         GGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT
genomic: ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatat ... gattctgcagGGAACTTGTACTAGCAGGAAAAGACATTGAAAGTGCATACTGGGAGCTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTCCAGAAGGCGATATCATCTTCCAATGCTTACAATGAACAGTTCAGgtatatatatatattttctaaattataattccatcatgttaacaagtcaattgcatgattcttttcagatgacctctacccatttgagatctcccaaggt

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