Sequence
atgc intronic sequence ATGC exonic sequenceAATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgttaatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgt-ctttctgttaata-ttattctcatctttcatttccttaatga-attttggagctaaatcttgaatctttacgattccttgtacttacgta
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CACCTAGTGAAATTGGTTGGTTACTGCATCGAAGATGACCAAAGGTTGCTAGTGTATGAATTTATGCCTCGTGGAAGCTTGGAGAACCATCTTTTTAGGAgtaagaatctttgcgtcctactgtcagtcatttttttcttcccatttgttgccaacagtttggagtt---ctttcattgttcacggtagcagtttttcttgta
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgtt----------aatattattctcatctttcatttccttaatgaattttggagcta--aatcttgaatcttt--acgattccttgtacttacgta--------------------------------------------------------------------------------------
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AATTTGGTCAGATTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTCTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctagcttattccttagcgattggagcattaacttctctttaggattcaccttttattccttaagcaaataatcgtgtatcatatgagggtgcattgttgctctgctatatttatttgtgtagcttagacgggctttgaatagtatcatggaaatgttgaatcttaagcaaatcattgtgctttctgctgtag
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctt-tctgttaatatt----------attctcatct----------ttcatttccttaatgaattttggagc--taaatcttgaatctttacgattccttgtacttacgta----------------------------------------------------------------------------
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AATTTGGTCAAGTTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTGTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctggcttattccttaatgattggagcactaacttctgtttaggattcacctttttttcttaagcaaataatcgtgtatcatatgagggcgcatgatgttctcctgtatttatttgtgtagcttaggcatcctttaaatagtatcatggaaatgttgaatcttaaagtaaacaattctgctttctactgtag
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgttaatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta--
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CATCTAGTGAAATTGGTTGGCTACTGCATTGAAGATGACCAGAGGTTGCTTGTGTATGAATTTATGCCCCGTGGAAGTTTGGAGAATCATCTTTTTAGAAgcaagtatcttttaatct--taccattattagttttatatgtaacatatatgctattgttatcttattttttcatttctatcagttaatccatgttagtgtt
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G16300.1 (Glycine max), 5'ss of exon 4
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgttaatattattctcatc-tttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta
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CACCTCGTTAAACTTATTGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAATTTATGCCTCGGGGAAGCCTGGAAAATCACTTGTTTAGGAgtaagttactattttctcacttctcggtttctcattgcagtatgaggccagataaaaatatt-ttggacttctgatgtcaatgaaaacttttgctcaaaat
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgttaatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta------
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CACCTTGTTAAACTTATTGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAATTTATGCCACGGGGAAGCCTGGAAAATCACTTGTTTAGGAgtaagttactattttctgactcatcagtttctcatttct--tttcc--aacaatagctggatc--attgctgcacctttatattttgctaacaacatccaatggag
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgt---taatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta
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AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttattatatctaattagtttcacattttctttttcaagaacaatagttggacc--actgctgcaccttgaaattttttagtaacatcaa-
upper sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 3
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctt-tctgttaatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta-
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AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAATTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagttactattttatatctaattagtttcgacattttctttttcaagaataatagttggacc--actgctgcaccttgaaattttaataacatcaaatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715633|gb|FC066791.1|FC066791EST: AGTTTATGAGTTTATGCCTCGAGGAAGTTTGGAGAATCATCTGTTTAGGA GGGCCCTGCCTCTTCCATGGGCCATAAGGATGAAAATTGCACTAGGTGCTG
genomic: AGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacct ... ttatatgtagGGGCCCTGCCTCTTCCATGGGCCATAAGGATGAAAATTGCACTAGGTGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgttaatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA