1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCTCGCTTGGGACCCTCAGATTAGCCAGGTGCCCGGTCGGAGGGACCCCTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatcttgaaccttatcagagatttttatggtttcttgtgaaactcatttcattgaatagaatattaggatctttaaaggatgtgctttatgtgaa...
species | Vitis vinifera |
transcript | Vv01s0010g03610.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110714874|gb|EE092283.1|EE092283
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|26260652|gb|CA811715.1|CA811715
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|26261206|gb|CA812269.1|CA812269
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110384344|gb|EC948774.1|EC948774
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110409815|gb|EC975487.1|EC975487
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110717809|gb|EE093989.1|EE093989
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110727524|gb|EE104379.1|EE104379
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110407142|gb|EC972738.1|EC972738
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGAEST: gi|110392429|gb|EC957843.1|EC957843
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
EST: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATG GAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
genomic: CTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatct ... attgatgcagGAAGCTCAGAAGCCATTAGCAGAATGCTTTACATCTGTCTTAAAGGGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTCGCTTGGGACCCTCAGATTAGCCAGGTGCCCGGTCGGAGGGACCCCTACGACGACCTTCTCCAACAGAACTTTTACAAGTCCAAGTAAATGAATGgtctgaatcttgaaccttatcagagatttttatggtttcttgtgaaactcatttcattgaatagaatattaggatctttaaaggatgtgctttatgtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagga