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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgagaacccgtagattgagagattatttttgggagagtttttattgatttttattatttgatttattttcaaaatgttttttttttctttgatt...

Basic information

species Vitis vinifera
transcript Vv00s0250g00020.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856312|gb|DT005367.1|DT005367
EST:     GGAGTGATGAATAGGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGGGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|71860017|gb|DT009072.1|DT009072
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCCGGTTCCATATCCGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|110731715|gb|EE106367.1|EE106367
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|110725728|gb|EE102561.1|EE102561
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|110390476|gb|EC955386.1|EC955386
EST:     GCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|110719002|gb|EE096483.1|EE096483
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|71858350|gb|DT007405.1|DT007405
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
EST: gi|110723499|gb|EE100881.1|EE100881
EST:     GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG                         GCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG
genomic: GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgag ... ttatctctagGCAATTTCTGGTTCCATATCTGACACCAAGATGAGTGATCCTGAATTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAGgtaaattgagaacccgtagattgagagattatttttgggagagtttttattgatttttattatttgatttattttcaaaatgttttttttttctttgatt

- - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggagag