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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcccacccattgctgcctcttgagttgacagttctattatgtcgtctcatttgtttaactctgtgttgtctactttgcttacag

Basic information

species Vitis vinifera
transcript Vv11s0052g00320.t01
intron # 29
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 29
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 26
GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcccacccattgctgcctcttgagttgacagttctattatgtc-gtctcatttgtttaactctgtgttgtctactttgcttacag
|||||| |||||||||||||| ||||| ||||| || |||||| | |||||||| || || ||| |||| |||||  |||||||| ||||||||||||||||||     |   |  ||  |   ||| |  |   |   | ||||| ||| |  | |    |    ||      ||| | ||||   || ||
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATTAATGTTGTTGCTGCAGTTTCGTCTGGTGATGTTCCATTAAATGCAGTGCAGgttga----ctttctttttttctttctaggttatgctcatgtattaagtcaggatgagccatgatgctaaaatctgt-tgctttctctatag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 29
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 26
GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcccacccattgctgcctcttgagttgacagttctattatgtcgtctcatttgtttaactctgtgttgtctactttgcttacag
|||||| |||||||||||||| ||||| ||||| || |||||| | || ||||| || || || ||||| |||||  |||||||| ||||||||||||||||||     |   |  || ||   ||| |  |   |     ||||| |||        |  | |  |     |    | ||||   || ||
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgttga----ctttctttttctctttctaggttatgctcacgtattaagtcaggatgagtcatgacattaaaatctgttgctttctctatag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 29
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 28
GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggc--ccacccattgctgcctcttgagttgacagttctattatgtcgtctcatttgtttaactctgtgttgtctactttgcttacag--
 || |||||||||||||||||||| |||||||| ||||||||  | || ||||| ||||| || || ||| | ||  | ||||| |||| |||||| |||||| |              | ||  |||||   |   | |  | |   | |   ||       ||        ||  | | | || | ||     
AAAGTTCATCCAGTTTCAGCTCACGGTTAATGTCGCAGCTCTTGTCATCAATGTGGTGGCTGCCATATCCGCGGGTGAAGTTCCTCTAACTGCAGTACAGgttcgaaatagtagttttatactctctctttc-tcatctgcacaaaagtattcacttcagaacttggtaaaaagtcttatcccttacctatgtag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 29
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 28
GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcccaccca---ttgctgcctcttgagttgacagttctattatgtcgtctca--tttgtttaactctgtgttgtctactttg-cttacag
||| |||||||| |||||||||||||| ||||| || |||||  |||||||||| || || || |||||   |||  | |||||||| |  || ||||||||| | |   |        ||    | | |||| |       ||| |       |   |  |||| | |  | | ||  || | ||||  | |||||
GAAGTTCATCCAATTTCAGCTCACAGTCAATGTCGCCGCTCTCGTAATTAATGTTGTAGCTGCTATTTCGAGTGGTGACGTTCCACTTACCGCTGTGCAGgtttgagtttctgttgcatttagctctttttgaatatctctctctctctaaatattataagtttgctcatatatttggcgttttctttaacatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299117|gb|CB975911.1|CB975911
EST:     ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAG                         CTCCTTTGGGTTAATTTTATAATGGATACTCTTGGAGCACTTGCATTGGCC
genomic: ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcc ... ttgcttacagCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCC
EST: gi|30299189|gb|CB975983.1|CB975983
EST:     ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAG                         CTCCTCTGGGTTAATCTTATAATGGATACTCTTGGAGCACTTGCATTGGCC
genomic: ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcc ... ttgcttacagCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCC
EST: gi|30299258|gb|CB976052.1|CB976052
EST:     ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAG                         CTCCTTTGGGTTAATTTTATAATGGATACTCTTGGAGCACTTGCATTGGCC
genomic: ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcc ... ttgcttacagCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCC
EST: gi|71883815|gb|DT032870.1|DT032870
EST:     ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAG                         CTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCC
genomic: ATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcc ... ttgcttacagCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCC