Sequence
atgc intronic sequence ATGC exonic sequenceGATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtatttcatgtgttgttaaaactttgttgtatatcttgttggcatagtagttaagaacttatgatacaataccatacatttttttatggaaattaatgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 22
GATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtatttcatg----tgttgttaaaactttgttgtatatcttgttggcatagtagttaa-gaacttatgatacaataccatacatttttttatggaaattaatgca
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GATCCTTGTCGACCTGGTGTCAAACAGGCTGTGGAACTTTGCCAAAAAGCTGGGGTTAAGgtatttcacaaaattgattttgaaagttatttg-gtgtcccattaagatacttatcgttgaagatgtacaaaaagtgtatcgatgtcaggatggctaatgg----
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 23
GATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtattt-catgtgttgttaaaactttgttgtatatcttgttggcatagtagttaagaacttatgatacaataccatacatttttttatggaaatta-atgca
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GATCCTTGCCGACCTGGTGTCAAAGATGCAGTGAAGCTTTGCCAAAAGGCTGGGGTTGAGgtattaatacatgcttttgatgttgaaattcattttgttccattatgcgacttaggtcattgagacg-agtataacatgttatagtactctatttgtactc-
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 25
GATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtattt-catgtgttgttaaaactt--tgttgtatatcttgttgg--catagtagttaagaacttatgatacaataccatacatttttttatggaaattaatgca
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GATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTGAGgtattaatacatgcttttgatgttgaaagtcatttgttccattaagcgacagtggttattgag--acgagtatacatgttatagtactctatttgtactgct---
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 25
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 22
GATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtatttcatgtg-ttg--ttaaaactttgttgtatatcttgttggcatagtagttaagaacttatgatacaataccatacatttttttatggaaattaatgca
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GATCCCTGTCGACCTGGTGTCAAACATGCTGTGGAACTCTGCCAAAAAGCTGGGGTTAAGgtatttcatacaattgattttgaaagctatttggtgtcccattaagatacttatcattgaacgagtacaaaa-agtgttttcagtgtcaggatggctaata--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110712227|gb|EE089604.1|EE089604EST: GACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAG GTACGGATGGTTACAGGTGACAATCTTCAAACAGCTAAAGCAATAGCCTTG
genomic: GACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtatttcatg ... tggcctatagGTACGGATGGTTACAGGTGACAATCTTCAAACAGCTAAAGCAATAGCCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGgtatttcatgtgttgttaaaactttgttgtatatcttgttggcatagtagttaagaacttatgatacaataccatacatttttttatggaaattaatgca
- - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa