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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAGgtcagcctctgccttgtctatcttttgtgcactggttttagcattattatgaacttcctttccttgtttcctgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g05110.t01
intron # 25
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692108|gb|EE070978.1|EE070978
EST:     TGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAG                         ATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC
genomic: TGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAGgtcagcctct ... tttcctgcagATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC
EST: gi|110385151|gb|EC949648.1|EC949648
EST:     TGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAG                         ATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC
genomic: TGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAGgtcagcctct ... tttcctgcagATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC
EST: gi|110715995|gb|EE090587.1|EE090587
EST:     TCTTTCCTTGAGAAACACAAAG                         ATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC
genomic: TCTTTCCTTGAGAAACACAAAGgtcagcctct ... tttcctgcagATTCTTTGACGCATAGAGCAGCAGTGGCAGAAATGCTCTCTGTCTTGGAAC