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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATATGGATAGATGAGTATGACATTGCAAAATTTGGACTCACAGATCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcattatctgctgctaggttttcttactataactattgagcattttttaggcacaactgcattgctctatctgatgatttaacatatgtccttttc...

Basic information

species Vitis vinifera
transcript Vv10s0003g04470.t01
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 25
GGAAGAATATGGATAGATGAGTATGACATTGCAAAATTTGGACTCACAGATCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcattatctgctg--ctaggttttcttactataactattgagcattttttaggcacaactgcat-tgctctatctgatgatttaacatatgtccttttc
|||| |||    || ||||  | ||| ||| | | ||| ||| |   |||| | || |||||| | |  || |||||||||||||||||||||||||||||||      ||   | |   |    ||   | ||| |       | ||  | | ||    |  |  || |||| |  |  ||| ||| | || |||  ||   
GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttccatgaacagaattcttgttctgtgctaaattagacaaccaaatatgagtttgattttaatctgctgttacgaatgtttttatat-tgtaattg--

upper sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 25
GGAAGAATATGGATAGATGAGTATGACATTGCAAAATTTGGACTCACAGATCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcattatctgctgctaggttttcttactataactattgagcattttttaggcacaactgcattgctctatctgatgatttaacatatgtccttttc--
||||||||   ||| ||||| | |||  | || || || ||||| |||||| | || |  ||| |||| || |||||||||||||||||||||||||| |||  |  |             || |  |||  | |||  |  |    | ||   |||    |   ||||||  | ||| || | ||  | | |  || |   
GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgt-------------gtgtatttaagacaacattgtaagtctgttcttgcat---tatgttgctcattgtga-gaatcaatttttttttttgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710922|gb|EE087531.1|EE087531
EST:     TCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTAAGATTTAATCTTGATCCTTTCAATGAACACAATGACGCTGACC
genomic: TCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcatta ... ctttgtgcagGAACTGTAAGATTTAATCTTGATCCTTTCAATGAACACAATGACGCTGACC
EST: gi|110711013|gb|EE087726.1|EE087726
EST:     TCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTAAGATTTAATCTTGATCCTTTCAATGAACACAATGACGCTGACC
genomic: TCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcatta ... ctttgtgcagGAACTGTAAGATTTAATCTTGATCCTTTCAATGAACACAATGACGCTGACC