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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTACGAGGTGGCATTATATAAGTGTTGCAGGAAGCATTTTAGCATGGTTTATATTCATTTTTATATATTCAGGTGTTATGACTCCTTATGATCGGCAAgtgagtgatttttaaaccatttcttttgtttttcttttagttttgttttatgtttatctaactagtgtatatgctaatttcttctcaattcatacatgcag

Basic information

species Vitis vinifera
transcript Vv00s0189g00030.t01
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 17
-TATTACGAGGTGGCATTATATAAGTGTTGCAGGAAGCATTTTAGCATGGTTTATATTCATTTTTATATATTCAGGTGTTATGACTCCTTATGATCGGCAAgtgagtga--tttttaaaccatttcttttgttt-----------ttcttttagttttgttttatgtttatctaactagtgtatatgctaatttcttctcaattcatacatgcag
  || || || ||||| ||||| |||||||  ||||| || ||||| |||||||| || |||||||||||||||||  |||  |||||||||||||| || |||| |    ||| ||  |    | | |||| |            |||   | |||| || |       |   | |  |||  |    | ||   | ||| ||  | ||     
CGATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAggtgaattccctttctactctgggtgtgttgtgtagaaaaagaaactctggcaattttcttatgacccattaagaatgctgttaacttgagttctgtttcattttctgca-----

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 25
TATTACGAGGTGGCATTATATAAGTGTTGCAGGAAGCATTTTAGCATGGTTTATATTCATTTTTATATATTCAGGTGTTATGACTCCTTATGATCGGCAAgtgagtgatttttaaacc----atttcttttgtttttcttttagttttg----ttttatgtttatctaactagtgtatatgctaattt--cttctcaattcatacatgcag
 || || || ||||||||||| |||||||  ||||| || ||||| |||||| | || ||||| |||||||||||  |||  |||||||||||||| || |||| |    |||  ||      | | || ||||        |  | ||    |||  |  | | | |   ||  |   || ||| ||   ||||   |   |   |||||
GATCACTAGATGGCATTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTCTTTTTATTTTCATATATTCAGGGATTAGCACTCCTTATGATCGTCAGgtgaattccctttctactctgggtgtgttgtgttgaaaaagaaactctggcaatttccttatgacccattaagaatgc-tgttaacttgagttctgtttcattttctgcag