Sequence
atgc intronic sequence ATGC exonic sequenceATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaatggaatcttatattcatagagtcattgtttttcatgttgagtagtcctatcattagcccatacctgatgtagatgatagaactgtagaatgagatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 20
ATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaatgga----atcttatattcatagagtcattgtttttcatgttgagtagtcctatcattagcccatacctgatgtagatgatagaactgtagaatgagatt
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CTTGGCATGAGATTCAATGACACAAGAACAAAGTCCTCTATTCTTCATGTTTTCCCATTCAACTCAGAGAAAAAAAGAGGCGGGGTTGCAGTGCATCTGgtaattcataatatctgcaactttgacagaccccttcccctattttttttcttattgtgtatggtacattaccatgtaaaatggcatgcctagtcaacta----
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 20
ATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaa--------tggaatcttatattcataga-gtcattgtttttcatgttgagtagtcctat-cattagcccatacctgatgtagatgatagaactgtagaatgagatt-----------------------------------------------
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CTTGGGATGAATTTTGACACTGCCAGATCAGACTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACACGGGTGgtaataccttgttggcatttta-attcaaatatgtaatttttttgcttctgttctaaactgatacattattagggagctaatatattatatgataatgtactatatcttgcttgtcatccagaccactattgctaataattttatacttttccgcag
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 19
ATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaa--------tggaatc-ttat--attcatagagtcatt--gtttttcatgttgagtagtcctatcattagcccatacctgatgtagatgatagaactgtagaatgagatt-------------------------------------
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ATTGGGATGAATTTTACGGCAGCTCGATCTGAATCATCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATTCAAACGgtacaatctcactggcattattactcaattatgcagatatttcgcttctattccagactagctgaaacattgctaggtagctaatatat-tgcttaaac-ataaactatatctgttagacagggcattataattttatgcctgtttgcag
upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 22
ATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaatggaatcttat-------attcataga-gtcattgtttttcatgttgagtagtcctatcatt-agcccatacctgatgtagatgatagaactgtagaatgagatt------------------------------------------
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CTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTGgtaatagcttgttgccattttaattcaaatatgtaaattttttgcttctgttctaaactgattagggagctaatatattatata-ataat-gtactatattttgtttgtcatccagaccactattgctaataattttatacttttccgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110712227|gb|EE089604.1|EE089604EST: GGGGGTGTTGCTATAAAACTG CCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTA
genomic: GGGGGTGTTGCTATCAAACTGgtaatggaat ... tattgtgcagCCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGgtaatggaatcttatattcatagagtcattgtttttcatgttgagtagtcctatcattagcccatacctgatgtagatgatagaactgtagaatgagatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaga