Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgattttccatctctcttatcttttgttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA12G03090.1 (Glycine max), 5'ss of exon 24
TGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgattttccatctctcttatcttttgttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac--
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TGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGGGCTGTCCAGAGCAACATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACgtata--gtattctaattcctttctcttcatttgtcccattttttaagtatttgattctgtttccttgaatgctttaactatttgataaattagtcttgcat
upper sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 24
TGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgatttt---ccatctctcttatctttt---gttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac
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TGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAAGGCTGTCCAGAGCAGCATTTTGTACACATATTGGAGCCTTTCTTGAAAATCATCACgtataggattctaattcctttctcttaatttttcccattttttaagtatttggttctgtttccttgaatgc-tttaactatttgataaattagtcttgcat-----
upper sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: EFJ18166 (Selaginella moellendorffii), 5'ss of exon 21
TGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgattttccatctctcttatcttttgttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac
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TGGTCAGGAAAGACTCGGTACAGAAGCTGGTGGCCTTCTTCCAGTCTTGCAGTGGCTCGTCTTTTGTACATATTTTGGAGCCCTTCTTGAAGATCATCACgtaagt-----tccatgctttgtg-cttttatttt----cgtctgaccattttgatttttggtgcag---------------------------------
upper sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: EFJ14289 (Selaginella moellendorffii), 5'ss of exon 20
TGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgattttccatctctcttatcttttgttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac
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TGGTCAGGAAGGACTCGGTACAGAAGCTGGTGGCCTTCTTCCAGTCTTGCAGTGGCTCGTCTTTTGTACATATTTTGGAGCCCTTCTTGAAGATCATCACgtaagt-----tccatgctttgtgtttttattttcgt-----ctgaccgttttgatttttggtgcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385202|gb|EC949705.1|EC949705EST: CCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCAC GAAATCATCCCGGATAAATACAACACTAGCTATTAATGGGTTGACACCCTT
genomic: CCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgatt ... cgaaatgcagGAAATCATCCCGGATAAATACAACACTAGCTATTAATGGGTTGACACCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACgtatgtgattttccatctctcttatcttttgttttgtggcttttcactgtattgattaagattgcattttcctattcaagatcctaattgtcaatggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctc