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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTAGCATCATCCCTCAAGAGGCCACTCTTTTCAAGGGTAGCATCCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctactcattttaactttctagttcaaagttcaaacaattttacataccaatattcagaaaagaagaggacttttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaag

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA08G20770.2 (Glycine max), 5'ss of exon 8
GAAGCTTAGCATCATCCCTCAAGAGGCCACTCTTTTCAAGGGTAGCATCCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctactcattttaactttctagttcaaagttcaaacaattttacataccaatattcagaaaagaagaggacttttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaag
|||||| |||||||||||||||||  | |||||||||||||| |||||  | || |||||||||||||||||||| ||||| ||  ||||||||||||||||||    |||      | || |  |||| |||  |   | |  |||| |||||| | |     |    ||    |||||  || |||     |||  || |    || | | ||| || |                 
GAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaact------agctctgcagttgaaaaatgttata--tttaaataccattctcttctatgtgag----ctttt--caataagc---tcaggtt-tggttatgtttaatttgtatatag-------------

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 10
GAAGCTTAGCATCATCCCTCAAGAGGCCACTCTTTTCAAGGGTAGCATCCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctactcattttaactttcta-------gttcaaagttcaaacaattttacataccaatattcagaaaagaagaggacttttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaag
 ||||| |||||||| ||||||||  | |||||||||||||| ||||| ||||  ||||||||||||||| |||| ||||||||  ||||||||||| |||| |  | |||   | ||   ||  |       ||   || || ||    ||||   ||    ||||||  ||  ||  |   | |  ||  | | |   | |||                                        
AAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTCGAAAGAACTTGGACCCTCTATGCCTGTACTCTGATGATGAAATATGGAAGgtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttctctatttctattcactaagcaaaggttttgtgggctttcattt--ttacag---------------------------------------

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 10
GAAGCTTAGCATCATCCCTCAAGAGGCCACTCTTTTCAAGGGTAGCATCCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctactcattttaactttctagttcaaagttcaaacaattttacataccaatattcagaaaagaagaggacttttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaag
 ||||| |||||||||||||||||  | |||||||||||||| |||||  |||| |||||||||||||||||||| ||||| ||  ||||  ||||| ||||||     ||      | ||||  ||||  ||  |     ||||| | | |  | |  |   || | |        | ||||  | | ||  ||   |||  ||||| ||| || |                     
AAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGAACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGATTTATGGAAGgtgaatgagct------agctttgcagttggaaaatatgttaatttaa-agaggagtgctggcaacacac-----tctctagc--ttactctttc---ttacacacatttcttatag---------------------

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 9
GAAGCTTAGCATCATCCCTCAAGAGGCCACTCTTTTCAAGGGTAGCATCCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctact-cattttaactttctagttcaaagttcaaacaattttacataccaatattcagaaaagaagaggacttttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaag
||| ||||||||||||||||||||  | |||||||||||||| |||||  | || ||| |||||||||||||||| ||    ||  ||||||||||| ||||||    |   |     ||||    | ||   |   |||  || | |   || |  | |   ||       |  |  |  |||  | |   |||    | |||   |||| |                          
GAAACTTAGCATCATCCCTCAAGAACCTACTCTTTTCAAGGGCAGCATTAGGACCAACCTGGACCCTCTAGGCCTCTATGACGATGATGAAATATGGAAGgtgaatgaatagctccacaactgaaaaatttgtaa--caagtaaatcttgttatctctttcacgagtcattcaataagtgcagcttttataaaatt---tgatttgtatatttag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695449|gb|EE073482.1|EE073482
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|110715223|gb|EE093024.1|EE093024
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|22011601|gb|BQ796635.1|BQ796635
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|30303963|gb|CB980757.1|CB980757
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGAAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|30300210|gb|CB977004.1|CB977004
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|30303898|gb|CB980692.1|CB980692
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|110359216|gb|EC920349.1|EC920349
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|219555058|gb|FG984847.1|FG984847
EST:     GAACTAACTTGGACCCTCTAGGCTTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|22011602|gb|BQ796636.1|BQ796636
EST:     TTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: TTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
EST: gi|29785172|gb|CB341926.2|CB341926
EST:     AACTAACTTGGACCCTCTAGAGC-TTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGG
genomic: AACTAACTTGGACCCTCTAG-GCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGG
EST: gi|219555135|gb|FG984396.1|FG984396
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAG                         GCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACAATGAAATATGGGAGgtgagcctac ... cattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTG