Sequence
atgc intronic sequence ATGC exonic sequenceTTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaaatggaaggattctcattcatttattacttttactttgctgaatattagaaaatctctttcttgttttagagtgatgctgtaataatgccattttatgtcttcaaattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G40060.1 (Glycine max), 5'ss of exon 2
TTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaaatggaaggattctcattcatttattacttttactttgctgaatattagaaaatctctttcttgttttagagtgatgctgtaataatgccattttatgtcttcaaattag
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TTTTAACCAAGGAAGGAGAAAGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtg-aattgagaatggcatgaataaaattttatcttgatttagt---gtgtttagcattccatataaggcatatcaatga-gttttacgttggctgttgag--------------
upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 2
TTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaaatggaaggattctcattcatttattacttttactttgctgaatattagaaaatctctttcttgttttagagtgatgctgtaataatgccattttatgtcttcaaattag
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TTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATgtaagtg-aactgagaatggcatgaataaaattttatcttgattt----gatttgtttagtattccatttccatataagg-------tatatcaatga-gttttacgttgtct------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110379205|gb|EC944385.1|EC944385EST: GTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCAT GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAA
genomic: GTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaa ... ttcaaattagGTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATgtaagtgcaaatggaaggattctcattcatttattacttttactttgctgaatattagaaaatctctttcttgttttagagtgatgctgtaataatgccattttatgtcttcaaattag
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