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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTGAAGGGTACCTCACTGAGAGCCAACGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCATTCGACTAATTGACAGgtgcaatgattgttcatggggttccatattcatggattttttgcaagtagttattaattgattaatatgtcaaatattttgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g01780.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G43790.1 (Glycine max), 5'ss of exon 3
AGGCTGAAGGGTACCTCACTGAGAGCCAACGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCA---TTCGACTAATTGACAGgtgcaa----tgattgttcatggggttccatat-tcatggattttttgcaagtagttattaatt-gattaatatgtcaaa-----tattttgcag
   | || || ||||| |||||||||||  ||||||| ||  |||| || |||||||||||||||||||| ||||||| ||  |   |||| |||||||||||||| |     | | | ||||   |  | | ||| | ||  |||| ||   | || || ||| |   |||    | |  ||     |  || ||||
---CAGACGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGgtgaagacttttaattttcacatgtattcttatgttataaatttattc--aatacttcttactccaattttccttttgaaatggttgattagcag

upper sequence: Vv19s0090g01780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G09020.1 (Glycine max), 5'ss of exon 2
AGGCTGAAGGGTACCTCACTGAGAGCCAACGACATGGGAAAGCTGGTTATAGTTTGACAAAGCTTCTTGCTCGGTTGAGAAC---CATTCGACTAATTGACAGgtgcaa----tgattgttcatggggttccatat-tcatggattttttgcaagtagttattaattgattaatatgtcaaatattttgcag
   | ||||| ||||| |||||||||||  ||||||| ||  |||| || ||||||||||| |||||||| ||||||| ||     ||||| |||||||||||||| |     ||| | || ||  |  | | ||| | ||  |||| ||| |  |   |   | ||   |  |        |  || ||||
---CAGAAGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAACTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGgtgaagactttgaattttaatatgtattcttatgttataaatttattgaatatttcttaaattttccttttgcaatggttgattagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720772|gb|FC070280.1|FC070280
EST:     AGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCATTCGTCTAATTGACAG                         GCCTCATGGGCAGCATTCAGTAATTTTGGCAGAAGACGTGCCAAAATACAT
genomic: AGTTTGACAAAGCTTCTTGCTCGGTTGAGAACCATTCGACTAATTGACAGgtgcaatgat ... tattttgcagGCCTCATGGGCAGCATTCAGTAATTTTGGCAGAAGACGTGCCAAAATACAT