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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGCAGCTGGCGGCTGTGTTTGCGCTCACTCTAGGAACCACTGGGATCAGTGTCGGTTTCAATTTCCTGGGCCGCGACTTCTACAATGCCCTCGCCAgtgagatttctgaattctctccttcgctttatttattgatacatgttgatttggtagtaaattgcatctacttgtttggccaatgcaag

Basic information

species Vitis vinifera
transcript Vv19s0085g01190.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G074103_T01 (Zea mays), 5'ss of exon 2
AGATTGCAGCTGGCGGCTGTGTTTGCGCTCACTCTAGGAACCACTGGGATCAGTGTCGGTTTCAATTTCCTGGGCCGCGACTTCTACAATGCCCTCGCCAgtg-agatttctgaattctctccttcgct--ttatttattgataca-tgttgatttggtagtaaattgcatctac-ttgtttggccaatgcaag------
||  ||  ||| || ||||||||||| |||||  |||||||||| ||||| ||||| || || || ||||| ||||| |||||||||||||| || ||  ||  || ||  ||   | |     | |||  |  ||| |     || |  |||  |  | |  || | ||   ||   |  |  |||   ||        
AGGCTGAGGCTTGCTGCTGTGTTTGCTCTCACATTAGGAACCACAGGGATTAGTGTTGGATTTAACTTCCTCGGCCGTGACTTCTACAATGCTCTTGCTGgtatagcttggtgttctgttaaaattgctattcttttgtaacctcagtagtgacgttctggataaatacacaaacacagaataaccagcacatttgataa