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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGAGCTGTGTGTGCCTCACTGCTTGCTAGAAATGGGGTGTCAGTGACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagactttcttcttcgtttttttatttgtttttctatgaagagaataaagtttagttataaattgaaaaacccatgaaatttttcgtttttcccctaa...

Basic information

species Vitis vinifera
transcript Vv19s0027g00380.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110708780|gb|EE086709.1|EE086709
EST:     ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAA                         AG-AATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
genomic: ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagacttt ... tttgacatagAGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
EST: gi|110732599|gb|EE108027.1|EE108027
EST:     ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAA                         AGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
genomic: ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagacttt ... tttgacatagAGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
EST: gi|294964791|gb|GW838594.1|GW838594
EST:     ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAA                         AGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
genomic: ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagacttt ... tttgacatagAGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
EST: gi|26257237|gb|CA808300.1|CA808300
EST:     ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAA                         AGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT
genomic: ACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagacttt ... tttgacatagAGAAATTACTGAAGATGGGAAGGAGCTGGTATTTGACCATGGTGCTCCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCAGGAGCTGTGTGTGCCTCACTGCTTGCTAGAAATGGGGTGTCAGTGACTCTTTTCGAGTCTGCTAGAGGACCTGGTGGTCGAATGTCTTATCGAAAgtgagactttcttcttcgtttttttatttgtttttctatgaagagaataaagtttagttataaattgaaaaacccatgaaatttttcgtttttcccctaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc