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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaaaaccctcctgcagtacttcaagaaccctaatatatttcaaggaagaaaacaacttcttcttcttcttcttccgtttttgttttctatgaaagaagatatgatgatgatgataatgggtgttgttgtgtttttgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g02740.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32247892|gb|CD713711.1|CD713711
EST:     GAAGAAGGGAAAC-GCCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGC-TATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|29784065|gb|CB344365.2|CB344365
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|26262826|gb|CA813889.1|CA813889
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|28960747|gb|CB340380.1|CB340380
EST:     GAAGAAGGGAAAC-GCCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAAGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGC-TATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|26260668|gb|CA811731.1|CA811731
EST:     GAAGAAGGGAAAC-GCCTATGGAATCGGCATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAAGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGC-TATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|32460868|gb|CD802042.1|CD802042
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGG
EST: gi|83275386|gb|DV939394.1|DV939394
EST:     GAAGAAGGGAAAC-GCCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAAGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGC-TATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|28964964|gb|CB343997.1|CB343997
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|28964860|gb|CB343893.1|CB343893
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG
EST: gi|26259170|gb|CA810233.1|CA810233
EST:     GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAG                         CTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGNCCAGCACGAGGGCAG
genomic: GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaa ... gtttttgcagCTATGTTGCGACCGTTGTGATGGAGGTTCCAGCAGCCCAGCACGAGGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAAGGGAAACAGCTATGGAATCGACATCGTAGAGACCGAGAAGAGgtaaacctaaaaccctcctgcagtacttcaagaaccctaatatatttcaaggaagaaaacaacttcttcttcttcttcttccgtttttgttttctatgaaagaagatatgatgatgatgataatgggtgttgttgtgtttttgcag

 AAGAAG