1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTAGAGGATTCTCTGGTTGATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactcaaacagctttctttatctctctccgtgtttctcgctgatccttctttttcttctgtattttctcag
species | Vitis vinifera |
transcript | Vv18s0072g00460.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTTGCTTCAAAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAG GAAACTGGAC-TCGGACGGCACGTGAAACCGATTACGGAAGCATCCATCCCEST: gi|156736039|gb|EV240153.1|EV240153
genomic: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactc ... attttctcagGAAACTG-ACATCGGACGGCACGTGAA-CCGATTACGGAAGCATCCATCCA
EST: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAG GAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAATEST: gi|34548933|gb|CF517165.1|CF517165
genomic: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactc ... attttctcagGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAAT
EST: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAG GAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAATEST: gi|34548840|gb|CF517072.1|CF517072
genomic: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactc ... attttctcagGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAAT
EST: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAG GAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAATEST: gi|33407190|gb|CF212817.1|CF212817
genomic: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactc ... attttctcagGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAAT
EST: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAG GAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAAT
genomic: ATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactc ... attttctcagGAAACTGACATCGGACGGCACGTGAACCGATTACGGAAGCATCCATCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGAGGATTCTCTGGTTGATTTGCTTCAGAGTCTCGCAGACATGGATATCACATTTAAAGCTCTTAAGgtagtgactcaaacagctttctttatctctctccgtgtttctcgctgatccttctttttcttctgtattttctcag
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