Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTAGCAAATTAGCAATGGAATGGTGGGATAAGATGATGTTTCCCATGCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctgccatcgtttgatttttttaacctttgaatatgttgatcacaggagaggattctcctctgactgttgcttgatcttatgcgatttggaaac...

Basic information

species Vitis vinifera
transcript Vv18s0001g09290.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363248|gb|EC926824.1|EC926824
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110719699|gb|EE095054.1|EE095054
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110723607|gb|EE101109.1|EE101109
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110426654|gb|EC993072.1|EC993072
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110717841|gb|EE094049.1|EE094049
EST:     GCGAACAGTCTGGAACGGCGTTGCGAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110364505|gb|EC927807.1|EC927807
EST:     AAGCGTTTTGGAATTTGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: AAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110408597|gb|EC974233.1|EC974233
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|51050053|gb|CO818357.1|CO818357
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110411766|gb|EC977489.1|EC977489
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|45770666|gb|CN006518.1|CN006518
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAGAAACTG                         GCCTACTGAAGCTGCGAAAAGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|30133737|gb|CB919076.1|CB919076
EST:     GAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110404810|gb|EC970334.1|EC970334
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110364916|gb|EC928517.1|EC928517
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110723241|gb|EE100327.1|EE100327
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110699923|gb|EE077375.1|EE077375
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACG-GAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110710686|gb|EE087040.1|EE087040
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|30137140|gb|CB922478.1|CB922478
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|30136752|gb|CB922090.1|CB922090
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|87586872|gb|DY474969.1|DY474969
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|27585632|gb|CB008327.1|CB008327
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|51052520|gb|CO819601.1|CO819601
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110381251|gb|EC946573.1|EC946573
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
EST: gi|110365535|gb|EC928679.1|EC928679
EST:     GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTG                         GCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC
genomic: GCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctg ... aacaaagcagGCCTACTGAAGCTGCGAAATGACGTGAGGACTTGTGAGTATAGGGATGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGGTAGCAAATTAGCAATGGAATGGTGGGATAAGATGATGTTTCCCATGCGAACAGTCTGGAACGGCGTTGCTAAGCGTTTTGGAATTCGAAAAACTGgtaagtgctgccatcgtttgatttttttaacctttgaatatgttgatcacaggagaggattctcctctgactgttgcttgatcttatgcgatttggaaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa