1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTTAAGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaattttaaaattgtttggctatcaactcattttttgcctttttattgtgggtgaaagtgcattttcacttctaccctatttgtttgggaagtggctaattcagctgattcttttttctgctctcactttcag
species | Vitis vinifera |
transcript | Vv16s0100g00650.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|110394381|gb|EC959247.1|EC959247
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|110389669|gb|EC954526.1|EC954526
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|351021758|gb|FQ437143.1|FQ437143
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCAAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|71865895|gb|DT014950.1|DT014950
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|77586726|gb|DV222495.1|DV222495
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|110385691|gb|EC950237.1|EC950237
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCAEST: gi|71890456|gb|DT039511.1|DT039511
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
EST: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAG GACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
genomic: AGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaat ... tcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTTAAGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGgtaatcaaattttaaaattgtttggctatcaactcattttttgcctttttattgtgggtgaaagtgcattttcacttctaccctatttgtttgggaagtggctaattcagctgattcttttttctgctctcactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG