1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGTTCCCAGATGGGGCAGAACAGTATATTGAGAAACTCTCACAGTACATTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctgctttcctgtgtttatttgagctctaaccattgccctttttttcccctatatttttggaagatcacttaaaattgatttctcttgcag
species | Vitis vinifera |
transcript | Vv15s0048g01990.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGG GTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCAEST: gi|37187830|gb|CF607183.1|CF607183
genomic: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctg ... tctcttgcagGTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
EST: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGG GTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCAEST: gi|110687173|gb|EE064354.1|EE064354
genomic: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctg ... tctcttgcagGTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
EST: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGG GTTGCCAGTTTTGGGGGGTACTTACTGAATCAAGGCATTTTAACTTTCTCAEST: gi|32249709|gb|CD715528.1|CD715528
genomic: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctg ... tctcttgcagGTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
EST: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGG GTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCAEST: gi|110365443|gb|EC928440.1|EC928440
genomic: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctg ... tctcttgcagGTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
EST: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGG GTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
genomic: TTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctg ... tctcttgcagGTTGCCAGTTTTGGGGGGTACTTACTAAATCAAGGCATTTTAACTTTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTTCCCAGATGGGGCAGAACAGTATATTGAGAAACTCTCACAGTACATTCCTTTAACTGGTGGAGTTCTAAGGACGGCTCTTGATATGGGATGTGGGgtaggagctgctttcctgtgtttatttgagctctaaccattgccctttttttcccctatatttttggaagatcacttaaaattgatttctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG