1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAGgtatatcttatgttcgttgatttgttttagtaattcctcactctaagtaactgtagtttgtttgtaggttcatgattaatcatttacaataatttttttc...
species | Vitis vinifera |
transcript | Vv15s0048g00390.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAG GCAGATTTGCTTGCTCGATATGGAGGTEST: gi|71873501|gb|DT022556.1|DT022556
genomic: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAGgtatatctta ... ctacatcaagGCAGATTTGCTTGCTCGATATGGAGGT
EST: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAG GCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATGGCTGAAGGAEST: gi|71885233|gb|DT034288.1|DT034288
genomic: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAGgtatatctta ... ctacatcaagGCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATGGCTGAAGGA
EST: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAG GCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATGGCTGAAGGA
genomic: GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAGgtatatctta ... ctacatcaagGCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATGGCTGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTCTTCTCAGgtatatcttatgttcgttgatttgttttagtaattcctcactctaagtaactgtagtttgtttgtaggttcatgattaatcatttacaataatttttttc
- AGAAGC
- - AAGCAA