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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatatgtttaccttttgcattgtctatatactttcctggaactgatatacatctcttttacctatcaaaaaaaaaaaaaaactttcctggaactg...

Basic information

species Vitis vinifera
transcript Vv14s0171g00330.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966487|gb|GW837622.1|GW837622
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|349823939|gb|FQ417326.1|FQ417326
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71857128|gb|DT006183.1|DT006183
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|33405585|gb|CF211212.1|CF211212
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71856777|gb|DT005832.1|DT005832
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|77585756|gb|DV221974.1|DV221974
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|110693499|gb|EE069785.1|EE069785
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71860914|gb|DT009969.1|DT009969
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|349820893|gb|FQ408601.1|FQ408601
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|110699690|gb|EE076907.1|EE076907
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71876529|gb|DT025584.1|DT025584
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|349811881|gb|FQ410678.1|FQ410678
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|161711586|gb|FC061248.1|FC061248
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|37189836|gb|CF609185.1|CF609185
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|349809818|gb|FQ398443.1|FQ398443
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|161713380|gb|FC062785.1|FC062785
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|22008847|gb|BQ793881.1|BQ793881
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71857556|gb|DT006611.1|DT006611
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|71860746|gb|DT009801.1|DT009801
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|349819860|gb|FQ404536.1|FQ404536
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|161712482|gb|FC061787.1|FC061787
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|37188441|gb|CF607790.1|CF607790
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|161707104|gb|FC057294.1|FC057294
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGACACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGACAGATCAAGAACGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
EST: gi|110690784|gb|EE068257.1|EE068257
EST:     GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT                         GCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT
genomic: GAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatat ... aaaattgcagGCCTCTCCAGCTTTGTCATCCCTTCTTGCAAAGAAAGATCAAGAAGGAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACTgtaagaatatgtttaccttttgcattgtctatatactttcctggaactgatatacatctcttttacctatcaaaaaaaaaaaaaaactttcctggaactg

- - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa