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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAGCTCAAGAATGCATGGTGAGGGGCAGATGGTTGGATTTGGCATCATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttgtttttctttaatgcttgaatttgttcatgaccgagattgttcttaaagaatgcggcaatggatgtgcatatgggcgagagcaaaataggc...

Basic information

species Vitis vinifera
transcript Vv14s0068g00220.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706931|gb|FC057263.1|FC057263
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|77586427|gb|DV222339.1|DV222339
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|110687972|gb|EE065988.1|EE065988
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|161707956|gb|FC057777.1|FC057777
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|110712478|gb|EE090143.1|EE090143
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|71863149|gb|DT012204.1|DT012204
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|110712589|gb|EE090382.1|EE090382
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|71855462|gb|DT004517.1|DT004517
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|110729402|gb|EE105325.1|EE105325
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|110390588|gb|EC955507.1|EC955507
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|294964529|gb|GW838332.1|GW838332
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGT
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGT
EST: gi|71862881|gb|DT011936.1|DT011936
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
EST: gi|71881662|gb|DT030717.1|DT030717
EST:     ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAG                         ATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA
genomic: ATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttg ... ttaatcccagATCTTGAGTGCATCTTCACTGTCATCTGTAATCTTGTCACGAAGTCTGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGAAGCTCAAGAATGCATGGTGAGGGGCAGATGGTTGGATTTGGCATCATTAATGCTCACATCTGCTGACTTGATGTTTTCCAAAGCATCAGATAAAGgtacagtttgtttttctttaatgcttgaatttgttcatgaccgagattgttcttaaagaatgcggcaatggatgtgcatatgggcgagagcaaaataggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggcgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa